Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0207
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 38 0.001
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 31 0.14
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 29 0.44
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 29 0.44
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.3
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.1
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.1
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 5.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 7.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.5
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.5
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +3
Query: 276 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 455
+A+V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+
Sbjct: 90 KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149
Query: 456 LVTERITLADV 488
LV R+TLAD+
Sbjct: 150 LVGSRLTLADI 160
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 130 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 246
N D KFP K+P F DG L+E+ AIA+Y+A+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 31.1 bits (67), Expect = 0.14
Identities = 25/76 (32%), Positives = 32/76 (42%)
Frame = +1
Query: 10 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 189
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 190 ADGKVLLTESNAIAYY 237
ADG L+E AI Y
Sbjct: 58 ADG-FELSEVIAIVKY 72
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/73 (23%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +3
Query: 276 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 449
+A + +W + + +++ P + WV + G + + ++ + + + + +LK+ + + R
Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152
Query: 450 TFLVTERITLADV 488
T+LV +R TLAD+
Sbjct: 153 TYLVGDRFTLADL 165
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 190 ADGKVLLTESNAIAYYVANESLAEEIWLPKPVSGSGHH 303
A+G + L Y + + A +IWL PVSG H+
Sbjct: 79 ANGVITLMLGEKGTYVINKQPPAHQIWLSSPVSGPKHY 116
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.5 bits (63), Expect = 0.44
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +1
Query: 403 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLSSVHCSCFPARARP--ERPFVADKRSAL 570
TY PP Y D+FS APS+ + S+S PA PFV S L
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISSPFVRKSSSDL 314
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 247 ESLAEEIWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 360
+ + +W+P PV SG T C+ LP G +T V
Sbjct: 17 QPFSNPLWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 37 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 216
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 217 SN 222
SN
Sbjct: 612 SN 613
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 211 TESNAIAYYVANESLAEEIWLP-KPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNRML 387
+ES I YY N E+WLP + S + T L+ ++L + C+ +
Sbjct: 722 SESRIIVYYSNNTLYLSELWLPQRTFSSKLNLAATPKRLLVDKYTNTLIIGCCHVLVNEI 781
Query: 388 NVQSLTYW 411
L ++
Sbjct: 782 TTSGLAFY 789
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 206 STFPSALSNAGTFPAGNFFKKSSDL 132
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 295 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 402
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +1
Query: 445 HAPSLLPRESHLPMSLSSVHCS------CFPARARPERPFVADKRSALVPDRRPP 591
H PS PRE ++ SL V S P RA P F KR A RPP
Sbjct: 391 HIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATP-TSFTERKRFAFDTRNRPP 444
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 7.2
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +1
Query: 16 AGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPA--GKVPAFES 189
+G YTY + Y A +S T+ NFV DF+K F G PAF
Sbjct: 430 SGSDYTYEQ----YINHSAVAFSFTEEIFEKNFV----TVLPDFVKLFSISFGYWPAFSF 481
Query: 190 ADGKVLLTESNAIAYYVANESLAEEIWLPK 279
D + L + Y + +L +++WL +
Sbjct: 482 YDELLKLLRNKYPKVYSSTPNLCDQVWLDR 511
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/91 (23%), Positives = 45/91 (49%)
Frame = -1
Query: 361 IPR*GKTQAQEAGSSSLSDHDAHCQTRAWVARSPPRDFHWQRSKRWHCFQLEAPFHRHFR 182
+ R G+T+ + G+++ + + Q RAW R ++ R++ W + ++ +
Sbjct: 184 LSRRGQTRRRRVGAAARASRVSQQQQRAWT-----RAWNAIRNRAWDALNSDLSYY-GMQ 237
Query: 181 MQALFRQETSSRSLRTCWSRQIRNSVLLSHQ 89
+ L ++ SS LR R+I ++ L S+Q
Sbjct: 238 QERLPARDVSSELLR----RRIESARLRSNQ 264
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 13 AAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 126
A G +YT E+FRA K+L S T V+ FV FGE
Sbjct: 329 ALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,083
Number of Sequences: 5004
Number of extensions: 60705
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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