Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0207
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 87   2e-17
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   0.81 
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)                 30   1.4  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 30   1.9  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   2.5  
SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   3.3  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   4.3  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        29   4.3  
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   7.6  
SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 28   7.6  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 42/77 (54%), Positives = 52/77 (67%)
 Frame = +1

Query: 10  MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 189
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 190 ADGKVLLTESNAIAYYV 240
                       +  YV
Sbjct: 60  KTANACTRAMPLLTTYV 76



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +3

Query: 294 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 473
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 474 TLADVIV 494
           TLAD+ V
Sbjct: 135 TLADIAV 141


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 43  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 222
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 223 AIAYYVANESLAEEIW 270
            I   + N+SL   +W
Sbjct: 165 IIVNDIENDSLM-NLW 179


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 428 GRTSSHTHLPCYRENH--TCRCHCLQYTAHAF 517
           G TS   +LPC   NH   C CH L  T H++
Sbjct: 79  GNTSQLLYLPCTMGNHHNYCICHALWETHHSY 110


>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
          Length = 619

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 593 AGGRRSGTNAERLSATNGRSGLARAGKHEQCTEDNDI 483
           A GR  G N ERL    GRS   +A +H +  +DND+
Sbjct: 48  ADGRGCGQNDERLGEKRGRS-CFKAEEHFETDKDNDV 83


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 342 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 485
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +3

Query: 249 KSRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAK--SDLLAALK 422
           K  G DL  + +V QW   +  +   A  A      G      ++VE AK  +D+   L 
Sbjct: 75  KLYGSDLFQRGQVDQWLDITTCDFEAAVAAVAIAKEG------RDVEGAKIVADINKFLG 128

Query: 423 VLDGHLLTRTFLVTERITLADVIV 494
            ++ HL  R FLV + +T+AD  V
Sbjct: 129 FVEKHLAGRKFLVGDSVTIADFSV 152


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 252 SRGGDLATQARVWQWASWSDSELLPASCA 338
           ++  DL T A+V+ WA W   ++   SCA
Sbjct: 74  TKSPDLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +1

Query: 103  APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLAE 261
            +PN +F      + +E +L  F +G   + E   SA+G++  L     +A  ++++   E
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857

Query: 262  EIWLPKPVSGSGHHGL 309
             +W P+PVSG     L
Sbjct: 1858 GLWKPEPVSGEAFSSL 1873


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 252 SRGGDLATQARVWQWASWSDSELLPASCA 338
           ++  DL T A+V+ WA W   ++   SCA
Sbjct: 74  TKSPDLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 427 WTDIFSHAPSLLPRESHLPMSLSSVHCSCFPA 522
           W  + +H  SL P  SH+    S   CS FP+
Sbjct: 610 WASVANHECSLFPSSSHIGYPESVFGCSLFPS 641


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +1

Query: 85   GTDVKVAPNFVFGETNKSEDF---LKKFPAGKVPAFESADGKVLLTESNAIAYYVANESL 255
            GT   V P+  F  T+  E     + K  A  +P  E+ D  +L   +NA    +A  +L
Sbjct: 1428 GTKADVPPS-AFCSTDPCEPVAASIAKPSAALIPPGETIDPNML---TNAEGQKIAVNNL 1483

Query: 256  AEEIWLPKPVSGSGHHGLT 312
            AE I +  P+SGS   G T
Sbjct: 1484 AEPIVISLPISGSSPPGNT 1502


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 172 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 53
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 437 SSHTHLPC--YRENHTCRCHCLQYTAHAFQH 523
           S +T  PC  Y+   TC C C+ YT     H
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYTPFPCPH 903


>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 452 LPCYRENHTCRCHCLQYTAHAFQHVLDPSVRSSLINVQRWFLTVAH 589
           L   R  H+ RCH L   +H    +  PS   +L++V    L V H
Sbjct: 209 LTLLRVTHSFRCHSLFSVSHIRFGITHPSPCHTLVSVSLTLLGVTH 254


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 360 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 494
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 890

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 175 PAFESADGKVLLTESNA-IAYYVANESLAEEIWLPKPVSGSGHHGLTANYCLLPALGSSL 351
           P F+S   KVLLT  N+  A+Y  N  L E I            GLTA +C L     S 
Sbjct: 425 PLFKSVRNKVLLTVKNSKRAFY--NNKLCENI-------NDFFIGLTAGFCPLSPSDVSD 475

Query: 352 TLVSCNS 372
             V C S
Sbjct: 476 VYVDCQS 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,490,746
Number of Sequences: 59808
Number of extensions: 502117
Number of successful extensions: 1540
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)