Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0206
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 82 9e-17
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 29 0.91
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.7
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 6.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 6.4
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 8.5
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 25 8.5
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 8.5
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 25 8.5
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 81.8 bits (193), Expect = 9e-17
Identities = 36/77 (46%), Positives = 55/77 (71%)
Frame = +1
Query: 1 VRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPN 180
+RLV + YG HDR S + +TD+DY VF+DA++++ G SPY+R TYRY+P++A L++P
Sbjct: 445 MRLVLLNYGIWHDRRSALKFTDIDYFVFSDASKYVSIGMSPYMRDTYRYTPMLAILLLPT 504
Query: 181 IIVGREFGKILFSVFDI 231
+GK LFS+ D+
Sbjct: 505 QYGFPSWGKYLFSISDL 521
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 321 WLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYP 500
W+ NP ISTRGN ++ L + +Y ++ ++ L+ LG ++H ++YP
Sbjct: 547 WILNPFVAIISTRGNCEAILGILSIALLYLIEKK-------SVWLASLILGFSVHFKIYP 599
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 299 CDGSIFRDAQLPFDQDLTAAARNISKTEKRIFPNSLPTIML 177
CD I R Q P TA N+S EK+ + SLP L
Sbjct: 282 CDDCIRRKKQAPLVTGTTARELNLSSEEKKSYLLSLPISQL 322
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 692 LLPVSFPRVWTRRTRISRVASSTQQEPKSFGS 597
++P+ FPR W+ + S+VA + ++ S S
Sbjct: 170 IIPLFFPRAWSPTVKFSKVARPSPEQTCSIFS 201
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 117 VTLHQMSRSVRENFVINISVWYYGKPIVYIPV 22
+T+H +R R +F +N+ +P V IPV
Sbjct: 174 ITVHGRTRQDRSSFPVNLDAIREVRPCVQIPV 205
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -2
Query: 502 NGYKRRCIAEPKKKPDRTMLVIEFLNTF 419
NGY R+C+ P+R + ++F+ +
Sbjct: 257 NGYLRKCLTFVPNSPERCIRCLQFIKPY 284
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 70 DYKVFTDAARHLVEGNSPYLRHTYRYS 150
+ +V T HLV G YL+ T RYS
Sbjct: 231 EVRVPTHVNNHLVRGIFAYLKQTCRYS 257
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 250 KSWSNGNWASRNMLPSQLNTVPYLGSTI 333
K W G AS N++PS +G I
Sbjct: 194 KDWRGGRGASANIIPSSTGAAKAVGKVI 221
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 250 KSWSNGNWASRNMLPSQLNTVPYLGSTI 333
K W G AS N++PS +G I
Sbjct: 194 KDWRGGRGASANIIPSSTGAAKAVGKVI 221
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 111 LHQMSRSVRENFVINISVWYYGKP 40
+H ++ +V +NF N+++ YG P
Sbjct: 256 IHHLTNAVAKNFSANVTLAAYGSP 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,406
Number of Sequences: 5004
Number of extensions: 70766
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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