Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0206
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    83   2e-16
12_02_0788 - 23152810-23152975,23153618-23153862,23154529-23154723     29   5.1  
02_04_0362 - 22366668-22367516                                         28   8.9  

>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/79 (48%), Positives = 51/79 (64%)
 Frame = +1

Query: 1   VRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPN 180
           VR   +  G   D    V YTDVDY VF+DAA  +  G SP+ R TYRYSPL+AYL++PN
Sbjct: 18  VRAAMLALGEWQDAHLEVRYTDVDYLVFSDAAASVAAGGSPFARATYRYSPLLAYLLVPN 77

Query: 181 IIVGREFGKILFSVFDIFL 237
            ++   +GK+LFS  D+ +
Sbjct: 78  SLLHPTWGKLLFSAADLLV 96



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 297 TAKYCALSWLYNPLSIGISTRGN 365
           T  +  ++WL+NP +  I TRGN
Sbjct: 113 TRIWSVVAWLFNPFTFTIGTRGN 135


>12_02_0788 - 23152810-23152975,23153618-23153862,23154529-23154723
          Length = 201

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 610 FGSCWVEEATREIRVLRVQTRGKETGNSQNTGCS 711
           +  C +E  T+E+ V+  Q R K    + +TG S
Sbjct: 64  YADCTIESVTKEVAVVTAQQRSKNIAEAIDTGFS 97


>02_04_0362 - 22366668-22367516
          Length = 282

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 231 ISGGCRQILVERQLGVAKYASVTAKYCALSWLYNPLSIGISTRGNADS 374
           + GG R ++ +R  GV    S    +  + WL  P    I TR ++ S
Sbjct: 36  VDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFS 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,127,156
Number of Sequences: 37544
Number of extensions: 433988
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)