Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0206
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1954| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_33073| Best HMM Match : Protamine_P1 (HMM E-Value=1.5)              32   0.56 
SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_19362| Best HMM Match : M (HMM E-Value=0.0014)                      28   6.9  

>SB_1954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/77 (57%), Positives = 55/77 (71%)
 Frame = +1

Query: 1   VRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPN 180
           VR+  ++YG   DR   V YTD+DY VFTDAARH+  G SPY R TYRY+PL+A L+ PN
Sbjct: 65  VRIGLMVYGEWQDRTMAVKYTDIDYHVFTDAARHVFYGRSPYERATYRYTPLLAMLLTPN 124

Query: 181 IIVGREFGKILFSVFDI 231
           I +   FGK+LF +FDI
Sbjct: 125 ISLNIAFGKVLFILFDI 141



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = +3

Query: 276 VAKYASVTAKYCALS---WLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITN 446
           + K   ++ K C +S   W +NP+   +S+RGNA+S    L+++++YF            
Sbjct: 150 IQKERGLSYKTCVVSSWFWFFNPMPATVSSRGNAESIMAALVLITLYFALKR-------K 202

Query: 447 IVLSGFFLGSAIHLRLYPLALLSLCIYL 530
            VL+GFFL  A+H +++P+ + SL ++L
Sbjct: 203 EVLTGFFLALAVHFKIFPI-IYSLPLFL 229


>SB_33073| Best HMM Match : Protamine_P1 (HMM E-Value=1.5)
          Length = 537

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 RFRYISGGCRQILVERQLGVAKYASVTAKYCALSWLYNPLSI 344
           R+R I+  CR I V  +    +Y  +  +Y  ++W Y P+++
Sbjct: 279 RYRPIAVRCRPIAVRYRPIAVRYRPIAVRYRPIAWRYRPIAV 320



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 RFRYISGGCRQILVERQLGVAKYASVTAKYCALSWLYNPLSI 344
           R+R I+  CR I V  +    +Y  +  +Y  ++W Y P+++
Sbjct: 391 RYRPIAVRCRPIAVRYRPIAVRYRPIAVRYRPIAWRYRPIAV 432


>SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 257 QDLTAAARNISKTEKRIFPNSLPTIMLGIIRYAIKGLYL*VCRR*GELPSTKCLAA 90
           + L++ AR +    K I    L  ++ G +      ++L  CRR GE+P  KC+AA
Sbjct: 250 KSLSSVARGVGNGLKAI-RKKLGELLPGPVGSIANFVFLKGCRRSGEIPWRKCVAA 304


>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
          Length = 722

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 258 PGFDGSRQKYIENGKKDFSEFSPDNNVR 175
           PG DG++   IENGK D SE     N R
Sbjct: 203 PGRDGNKYMGIENGKADVSEKLLQENER 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,230,637
Number of Sequences: 59808
Number of extensions: 502588
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)