Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0206
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    89   2e-18
AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    29   2.6  
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    29   3.4  

>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 37/79 (46%), Positives = 58/79 (73%)
 Frame = +1

Query: 4   RLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPNI 183
           R++ + Y +IHD    V +TD+DY VF+DAA+H+  G SP+ R TYRY+P +A++++P +
Sbjct: 26  RIILVFYAHIHDYLFKVNFTDIDYHVFSDAAKHVSNGGSPFDRATYRYTPALAWILLP-V 84

Query: 184 IVGREFGKILFSVFDIFLA 240
           +   +FGKILF +FDI +A
Sbjct: 85  VHFPDFGKILFCIFDILVA 103



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = +3

Query: 321 WLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYP 500
           WL NPL+  IS RGNA+S    +++L+I  LQ   +K++    ++ G     AI L++YP
Sbjct: 137 WLANPLTAIISARGNAESIVAAVVLLNIVLLQKGYWKSA---ALVHG---ALAIQLKIYP 190

Query: 501 LALL 512
           L  L
Sbjct: 191 LIYL 194


>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 309 CALSWLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVL 455
           CAL+W+ NP+ I +    +++ F  +  +L +YF   N+   SI NIV+
Sbjct: 15  CALAWVVNPIFIYLIFTESSNKFGNYRFLL-LYFALFNL-TYSIVNIVV 61


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 309 CALSWLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVL 455
           CAL+W+ NP+ I +    +++ F  +  +L +YF   N+   S+ NIV+
Sbjct: 15  CALAWVVNPIFIYLIFTESSNKFGNYRFLL-LYFALFNL-TYSVVNIVV 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,313
Number of Sequences: 27780
Number of extensions: 383815
Number of successful extensions: 1023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)