Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0206
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.98 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              24   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 228 IENGKKDFSEFSPDNNVRYH*IRDQRAVSVSVP 130
           + NG  + S  SP++N R    R++  +SVS P
Sbjct: 314 VHNGSNNGSPRSPESNSRCSVKREKIKISVSYP 346


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 249 DGSRQKYIENGKKDFSEFSPDNNVRYH*IRDQRAVSVSVPEIGRV 115
           D + Q YIE   K FS    D N   H  R+   + ++  EI ++
Sbjct: 56  DENVQLYIECAMKKFSFVDKDGNFNEHVSREIAKIFLNENEINQL 100


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 169 MIPNIIVGREFGKILFSVFDIFLAAAVKSWSNGNWASRNMLPSQLNTVPYL 321
           ++P + VG E   +      +   A V S+       +++LPSQ    PYL
Sbjct: 223 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYL 273


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 329 QSSKYRHLDSRQCRFIPVFLDRPIDILPSVE 421
           ++ K   LDS     +P+ LD  IDIL  V+
Sbjct: 325 ENDKKLDLDSIDMMQLPIQLDDGIDILDDVK 355


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 555 LRFILYFPKDRYIGK 511
           LR ILYF +  Y+GK
Sbjct: 523 LRMILYFSEFAYLGK 537



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 621 TRTKIIWFLLGSNETRPS 568
           TR  +++FLL S+ TRPS
Sbjct: 3   TRILLLFFLLLSSCTRPS 20


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 621 TRTKIIWFLLGSNETRPS 568
           TR  +++FLL S+ TRPS
Sbjct: 3   TRILLLFFLLLSSCTRPS 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,702
Number of Sequences: 438
Number of extensions: 4944
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)