Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0206
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    84   8e-17
At4g27220.1 68417.m03909 disease resistance protein (NBS-LRR cla...    33   0.20 
At5g13590.1 68418.m01572 expressed protein                             30   1.4  
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta...    30   1.8  
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    28   7.4  
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    27   9.8  
At3g54910.1 68416.m06085 expressed protein various pedicted prot...    27   9.8  
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai...    27   9.8  

>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 40/79 (50%), Positives = 50/79 (63%)
 Frame = +1

Query: 1   VRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPN 180
           +R+  I+YG   D    V YTDVDY VF+DAA  +  G SPY R TYRYSPL+A L+ PN
Sbjct: 28  LRVFLIVYGEWQDAHMEVRYTDVDYIVFSDAASLMASGESPYKRTTYRYSPLLALLLTPN 87

Query: 181 IIVGREFGKILFSVFDIFL 237
               R +GK LFS  D+ +
Sbjct: 88  SFFHRSWGKFLFSASDLLV 106



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 276 VAKYASVTAKYCALS---WLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITN 446
           + K   V  K C  S   WL+NP +  I TRGN +   C +I+  I  L          N
Sbjct: 113 ILKQRKVPEKICTYSVMVWLFNPFTFTIGTRGNCEPIVCAMILWIILCLMQG-------N 165

Query: 447 IVLSGFFLGSAIHLRLYPL 503
           ++ + F+ G  +H R+YP+
Sbjct: 166 LLQAAFWYGLVVHFRVYPI 184


>At4g27220.1 68417.m03909 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 919

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 627 DPTRTKIIWFLLGSNETRPSLIGVLRFILYFPKDRYIGKVRLTGTSVDVLRNLKRSLI 454
           D  R   IWF+    E   SL+   R ++ FP+D+++  V+      + L  L  ++I
Sbjct: 433 DVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVI 490


>At5g13590.1 68418.m01572 expressed protein 
          Length = 1190

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 279  RRPIAVRPGFDGSRQKYIENGKKDFSEFSPDNNVR 175
            +RP   R GF   R K++ N K+DF  F   + VR
Sbjct: 920  QRPYRGRSGFARGRTKFVNNPKRDFPGFRSRSPVR 954


>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
           Pfam profile PF02453: Reticulon
          Length = 253

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 160 AYLMIPNIIVGREFGKILFSVFDIFLAAAVKSWSN 264
           A++++ +I +GR+  K L  VF +++ + V +W N
Sbjct: 157 AFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFN 191


>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 680 SFPRVWTRRTRISRVASSTQQEPKSFGSCWVAMKLD 573
           S PRVWT +  I  +    + E  S  S   A++LD
Sbjct: 560 SMPRVWTGKEDIRAITKDARAEALSLLSVMTAIRLD 595


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +1

Query: 214 FSVFDIFLAAAVKSWSNGNWASRNMLPSQLNTVPYL 321
           F+ F +        WS GNW     +     T+PY+
Sbjct: 179 FNEFQLVYKGTTPYWSTGNWTGEAFVGVPEMTIPYI 214


>At3g54910.1 68416.m06085 expressed protein various pedicted
           proteins, Arabidopsis thaliana
          Length = 373

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 326 LQSSKYRHLDSRQCRFIPVFLDR--PIDILPSVE 421
           L   KY H DS +C+ +  FLD+  P+   P +E
Sbjct: 3   LPKLKYGHRDSSECKRLECFLDKNLPLHRAPVIE 36


>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 215

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 275 AQLPFDQDLTAAARNISKTEKRIFPN 198
           AQ+PFD+ L  AA +  KT + +FP+
Sbjct: 132 AQIPFDKVLNDAALSYIKTNELMFPS 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,092
Number of Sequences: 28952
Number of extensions: 359668
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)