Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0205
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    28   1.5  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   4.7  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   4.7  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   6.2  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   6.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.2  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 128 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIM 223
           SYN + ++ +     F+G+L++  G   GY +
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYAL 48


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 113 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 223
           A  Y S+   A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 196 RWCGRGLHNADSFTQTDRHLYSLVGVALFVASGAIIIDRFQHYGKSEIKD 345
           R+  R LH+   F Q  RHL  +    LF+        R  H G   I+D
Sbjct: 88  RFVTRSLHDVGDFEQCKRHL--VENGKLFIQRARACRQRIAHLGYPLIRD 135


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 83  LELALTCSCVA-LH-YHSYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQTPSHKRIDIS 256
           L  A TC  V  LH         D+G +   T++ Y  +  GAA      TP++   D S
Sbjct: 292 LGAAATCKYVFDLHPTDRMGCAGDVGWITGHTYIVYGPLMLGAATLVFESTPAYP--DYS 349

Query: 257 IRWSVL 274
             WSV+
Sbjct: 350 RYWSVV 355


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 648 VTNQKTVFLPPSHEKKKTITKQNI-ICIEILR*Q*LRWNSDY*ADHSNLIRQHCICMQHL 472
           +T+ K  +    + K KT  K+ +   +  LR     W+     DH N+++  C C+  L
Sbjct: 143 ITDAKIYYAAKVYRKTKTSHKKRLNTMVYFLR----EWSIQPKLDHPNILKVICPCVT-L 197

Query: 471 KSFSDCAALFCV 436
            S  + +A FC+
Sbjct: 198 TSVFNKSAGFCL 209


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +3

Query: 42  SESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRAT 218
           S S  S+   SSS +   +    ++ST TVT     S+ SS VP S T++ +L   +A+
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKAS 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,070
Number of Sequences: 5004
Number of extensions: 58456
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)