Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0205
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1620 + 38697960-38698131,38698532-38700732                       29   3.7  
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662...    28   6.5  
03_06_0653 - 35305279-35306163                                         28   8.6  

>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 417 TRRLNYVHKIELHNQKRISNAAYKYNAVLLGYYGPPNNLNSTAITVT-SIFL 569
           TR +  VH  EL   K  S +AY YN   L +Y    NL      ++ SIF+
Sbjct: 380 TRDVTNVHNCELTCLKNCSCSAYSYNGTCLVWYNGLINLQDNMGELSNSIFI 431


>11_06_0027 +
           19363678-19363698,19364442-19364484,19366240-19366276,
           19366359-19366602,19366749-19366765,19366901-19366986,
           19367347-19367378,19367455-19367615,19367722-19367818,
           19367894-19368085,19368172-19368233,19368302-19368448,
           19368776-19369589
          Length = 650

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 241 TDRHLYSLVGVALFVASGAIIIDRFQHYGKS----EIKDKNLAKASLAIINGA 387
           TD+H+Y L G+   V  G +I   ++ Y K+    E+ D+++ + +   + GA
Sbjct: 272 TDKHIYELFGI--IVHEGGVIGGHYRSYVKTNCWYEVSDRDVKRVNENFVLGA 322


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 214 ARGRTSEYDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKL 77
           A   +SE +   D   GDE A  R C      E+  R  +CQ +K+
Sbjct: 175 AASSSSEEEAACDDDDGDECAARRWCCAREYFEAKERWEECQFKKM 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,523,068
Number of Sequences: 37544
Number of extensions: 386495
Number of successful extensions: 887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)