Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0205
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               30   1.6  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               30   1.6  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)                      29   5.0  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    29   5.0  
SB_6302| Best HMM Match : DUF594 (HMM E-Value=4.4)                     28   6.6  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         28   6.6  
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)          28   8.8  
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 193 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 20
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 106


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 193 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 20
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 666


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +2

Query: 257  IRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAKLR 436
            +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ ++ 
Sbjct: 974  LRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQERIY 1033

Query: 437  TQNRAAQSE 463
               R  Q +
Sbjct: 1034 RHARVCQGD 1042


>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
          Length = 496

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 12  AIIIIKFKFRSESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISA 155
           A+++I     S S  +   LS S W W +    WLS   +  ++ I A
Sbjct: 127 AVVVINHMGTSHS-TALNALSKSIWLWAIERNLWLSAAHLAGKLNIEA 173


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 501 RQHCICMQHLKSFSDCAALFCVRSLASSLRED 406
           +  C C Q +K +SDC  L C       ++ D
Sbjct: 288 KSRCKCFQSVKRYSDCDCLGCENPYGKKMQRD 319


>SB_6302| Best HMM Match : DUF594 (HMM E-Value=4.4)
          Length = 339

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 250 HLYSLVGVALFVASGAIIIDRFQHYGKS--EIKDKNLAKAS 366
           +LYS +GV LFV    +++D      ++   I+ ++L K S
Sbjct: 138 YLYSSLGVRLFVVVATVVVDSMNRQARTAQAIRQRSLIKGS 178


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 VGVALFVASGAIIIDRFQHYGKSEI 339
           VGV ++   G  ++D  QHY K+E+
Sbjct: 536 VGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
          Length = 767

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 251 ISIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 373
           ++ +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 232 LAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 251 ISIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 373
           ++ +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 232 LAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,533,310
Number of Sequences: 59808
Number of extensions: 463457
Number of successful extensions: 1157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)