Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0205
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    27   0.18 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    27   0.18 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    27   0.18 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 486 KYNAVLLGYYGPPNNLNSTAITVTSIFLYIL 578
           +YN ++ G  G P ++N   I + +I+L+ L
Sbjct: 150 RYNVIVKGLSGKPLSINGALIRIIAIWLFSL 180


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 486 KYNAVLLGYYGPPNNLNSTAITVTSIFLYIL 578
           +YN ++ G  G P ++N   I + +I+L+ L
Sbjct: 116 RYNVIVKGLSGKPLSINGALIRIIAIWLFSL 146


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 486 KYNAVLLGYYGPPNNLNSTAITVTSIFLYIL 578
           +YN ++ G  G P ++N   I + +I+L+ L
Sbjct: 26  RYNVIVKGLSGKPLSINGALIRIIAIWLFSL 56


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 295  AIIIDRFQHYGKSEIKDKNLAKASLAIINGAILLVDAVLTQRG 423
            A+ I +  H  + + + K LAK   +  +G ++ V+ +L Q+G
Sbjct: 1095 AVQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISVENLLAQKG 1137



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 177 TKVPVTSMPISASAL 133
           T VP+TS+P S++++
Sbjct: 852 TTVPITSLPASSTSI 866



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 114 LSTTTVTMQMRISACSSPVPLSGTSS 191
           LST T T  + ++   + VPL+ +S+
Sbjct: 512 LSTATSTCSLAVAKQQNQVPLTSSSN 537


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 566 SIHIMFCLVIVFFFSCEGGKK 628
           ++ I F  V+VF+   E G+K
Sbjct: 244 TVLISFLCVLVFYLPAEAGEK 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,220
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)