Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0205
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77640.1 68414.m09039 AP2 domain-containing transcription fac...    31   0.58 
At5g19340.1 68418.m02305 expressed protein                             28   7.2  
At3g11810.1 68416.m01447 expressed protein                             27   9.5  

>At1g77640.1 68414.m09039 AP2 domain-containing transcription
           factor, putative Similar to DREB1A (GP:3660548)
           [Arabidopsis thaliana]
          Length = 244

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = +3

Query: 420 RRLNYVHKIELHNQKRISNAAYKYNAVLLGYYGPPNNLNSTAITVTSIFL 569
           R  N   +I L +      AA  Y+A LL   GP  NLN   IT TS FL
Sbjct: 59  RAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFL 108


>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 84  WSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYS 197
           W   LR++   +TTT T   R+S+ S     S TSS S
Sbjct: 160 WKELLRLKKQRTTTTTTASTRVSSLSPSSSSSSTSSSS 197


>At3g11810.1 68416.m01447 expressed protein 
          Length = 348

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 426 LNYVHKIELHNQKRISNAAYKYNAVLLGYYGPPNNLNSTAITVTSIFLYIL 578
           + Y+  I + N   I + AY   +V  G+YG P  LNS   +  + FL +L
Sbjct: 94  IGYIVVITVFNLLAIGSIAY---SVFQGFYGRPVKLNSAVKSSFASFLPLL 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,918
Number of Sequences: 28952
Number of extensions: 306378
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)