Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0204
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.53 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    29   0.70 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   3.7  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   8.6  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.6  

>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 297 QRRRVQGIGRTRHRRARVHSARLVQERGQTALHDVTIIVTRHGQEQ*RRASRETCTHRVP 476
           +R+RV+ +G T+HR+ R    R++QE     L ++   ++   +     AS    T R+ 
Sbjct: 4   KRKRVEELGETKHRQVR---QRILQEHKNDILENLAFELSDKVRRLRSNASLLASTIRMR 60

Query: 477 GR---ALTPRALR 506
           G    A  PRA R
Sbjct: 61  GEMRIAAIPRAQR 73


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 271 RRASERHRSLTLC--CHNGHSLIASRRVFC 188
           +R S +   +TLC  C  GHS +++R VFC
Sbjct: 181 KRKSRKVDMVTLCSVCQRGHSPLSNRIVFC 210


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 189 QNTRRLAISEWPLWQQRVSDLCRSDARRQNRGHTTGQRRRVQGIGRTRH 335
           +NT R +  E   +   + +L  ++  RQ+RG+    RR  +  GR +H
Sbjct: 344 KNTLRFSDMESSSFAPMIYELNDAEMERQDRGYDREARRMRRRQGRAKH 392


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 240 PFVAIMATRLLRAGVCFVYNF*QGSRYRFYERTLN 136
           PFV ++ +R    G+C +     G RY+  + +L+
Sbjct: 383 PFVIVVGSRFQEEGICEIIVRSSGERYKLDKDSLH 417


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 93  ARHVSLISQMRSQVTERRRA*RDAPIGT 10
           A HV LIS  RS  ++ RR   D  I T
Sbjct: 57  ASHVELISDERSDSSDSRRGKEDFSIST 84


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 VWPRFCRRASERHRSLTLCCHNGHSLIASRRVFCLQ 182
           +W R    A++ ++  +     GHS++A+R +F L+
Sbjct: 892 IWLRIIPHATDVNKKASFFDIGGHSILATRLIFELR 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,047
Number of Sequences: 5004
Number of extensions: 42232
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)