Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0204
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0190 - 1583044-1583802 31 0.72
07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446 30 1.3
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.2
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 29 2.2
02_05_1148 - 34458732-34460627,34462299-34462547 28 6.7
02_02_0327 - 8983983-8985878 28 6.7
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 6.7
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 27 8.9
02_05_0212 - 26808484-26809368 27 8.9
>08_01_0190 - 1583044-1583802
Length = 252
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +3
Query: 171 PVKNCKQNTRRLAISEWPLWQQR---VSDLCRSDARRQN----RGHTTGQRRRVQGIGRT 329
P + + RR+++ W LW +R V+ + +S R+ GH G+RRR T
Sbjct: 13 PSPSSTRGRRRVSVKPWRLWWRRCAGVAAVIQSKIHRRAVRWPGGHGGGRRRREAATAST 72
Query: 330 RHRRARVH 353
R R H
Sbjct: 73 REREGWCH 80
>07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446
Length = 578
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 313 WTLRR*PVVWPRFCRRASERHRSLTLCCHNGHSLIASRRVFCLQFLTGQSLSLL*AYVE 137
W R V W R A+E R LCC +GH + +S + ++F ++ Y+E
Sbjct: 337 WVPRSRSVHWDSIHRVATEWFRPNPLCCKHGHKVCSSGYMDKIEFCDVSLEPVIEVYLE 395
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 444 ASRETCTHRVPGRALTPRALRPDLXA--ASIPTSTATQLPLAPADAP 578
AS + R+P L RAL P L A S+P A+ P P AP
Sbjct: 558 ASSPSTVPRMPSAPLALRALAPHLRALRVSVPHPRASSAPAPPVAAP 604
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 468 RVPGRALTPRALRPDLXAASIPTSTATQLPLAPADAPVELT 590
R P L P A P +PT P PAD P T
Sbjct: 263 RAPSCTLAPPAPTPPAPTFHVPTPPTPATPAPPADVPPGFT 303
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 384 TALHDVTIIVTRHGQEQ*RRASRETCTHRVPGRALTPRALRPDLXAAS 527
TA+ V I+V R RR R +C+ P R+L+PRAL A S
Sbjct: 227 TAIVTVAIVVIRRSY---RRGRRLSCSSFSPRRSLSPRALSSSPSAMS 271
>02_05_1148 - 34458732-34460627,34462299-34462547
Length = 714
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 370 KNEDKLRYMTSRLSSPDTDKS--NDGEPLE 453
++ +L +MTS L PDTD+S ND EPL+
Sbjct: 175 RSSGRLHHMTSLL--PDTDRSIFNDDEPLD 202
>02_02_0327 - 8983983-8985878
Length = 631
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 233 TKGKRPMPL*RPATKSRPYNGSTTESPRHRSHET*ACQSPLCAAGAR 373
++G PMP KS S P+ RS T C P C GAR
Sbjct: 208 SQGPAPMPTLLQLPKSPVACTSGLSRPQQRSSSTKNCTYPGCMKGAR 254
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 164 RLPCQKL*TKHTPARNKRVAIMATKGKRPMPL*RPATKSRPYNGSTTESPRHRSHET 334
R P +K ++ P +K +I T G+ P+ + RPY + SPR + +
Sbjct: 544 RSPVRKSVSRSPPTMDKGRSISRTSGRLPLRRSISRSPDRPYRRIPSRSPRKNTRRS 600
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 255 RSDARRQNRGHTTGQRRRVQGIGRTRHR 338
RSD R + RGH + +RR G RHR
Sbjct: 121 RSDDRDRRRGHDSERRRDRDRDGHRRHR 148
>02_05_0212 - 26808484-26809368
Length = 294
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 504 RPDLXAASIPTSTATQLPLAPADAPVELTTKRS 602
+P AAS+P S+ +PL P A EL S
Sbjct: 77 KPKAKAASVPPSSPPPVPLGPVPALTELPAGHS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,606
Number of Sequences: 37544
Number of extensions: 321406
Number of successful extensions: 1177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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