Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0204
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               30   1.3  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          29   2.2  
SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076)           29   3.9  
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)                  29   3.9  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)                   28   5.2  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             28   6.9  
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_39700| Best HMM Match : MBT (HMM E-Value=6.6)                       27   9.1  
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)                   27   9.1  
SB_1732| Best HMM Match : GETHR (HMM E-Value=1.7e-06)                  27   9.1  
SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)                   27   9.1  

>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 486  LTPRALRPDLXAASIPTSTATQLPLAPADAPVELTTKRSEP 608
            +T  AL   L A S P ++   LP+AP   P + TT+ S+P
Sbjct: 1775 ITQPALSSPLVAQSAPPNSQAALPVAPVIPPAQSTTQASQP 1815


>SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 262 TPGDKIEAIQRVNDGESKASVARDIGVPESTLRGWCKNEDKLRYM 396
           T  DK++ I      +++A   R+ GV E+ +R W KN++ L+ M
Sbjct: 9   TANDKLKIIGFAGTNDNRAE-EREYGVNETNIRQWRKNKENLKTM 52


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 266 PATKSRPYNGSTTESPRHRSHET*ACQSP 352
           P  ++R YN +TT  P H  H T  C+SP
Sbjct: 330 PVVRTR-YNTTTTSHPLHHVHATIKCESP 357


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = +3

Query: 450 RETCTHRVPGRALT------PRALRPDL--XAASIPTSTATQLPLAPADAPVELTTKR 599
           R+T  HRVP R +T      P  ++P L   AAS   +TAT +  AP       TT R
Sbjct: 147 RDTVPHRVPERNITIRVTIPPSFVKPKLTYKAASTMVTTATSMVTAPTSKTSLTTTLR 204


>SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 252 CRSDARRQNRGHTTGQRRRVQGIGRTRHRRARVHSARLVQERGQTA 389
           C+   +R  +G       R+ GIG     R R H+ R+V+ RG  A
Sbjct: 28  CKVHLKRLRKGIPLPVPCRICGIGTRSETRLRAHAERIVKGRGCVA 73


>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 261 DARRQNRGHTTGQRRRVQGIGRTRHRRARVHS 356
           D+ R+NR  T    RRV     TRHR+A   S
Sbjct: 734 DSVRKNRQQTEASGRRVDKADNTRHRKAATKS 765


>SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076)
          Length = 255

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 274 KIEAIQRV-NDGESKASVARDIGVPESTLRGWCKNEDKLRYM 396
           K+E I+   N+G +K    R  G+P   +  W K ED +  M
Sbjct: 83  KLEVIEWYKNNGLNKNKTCRQFGIPRKCITQWLKMEDVISGM 124


>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
          Length = 394

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 231 QQRVSDLCRSDARRQNRGHTTGQRRRVQGIGRTRHRRAR-VHSARLVQERGQTALHDVTI 407
           Q+R +   R  + R  R H   Q R  +G+  T  R  R  H+ +  Q RG       T 
Sbjct: 142 QERPARGPRETSTRTKRDHQADQERPARGLKETSKRTKRDQHADQERQARGPRETSKWTK 201

Query: 408 IVTRHGQEQ*RRASRET 458
              + GQE+     RET
Sbjct: 202 RDKQEGQERPASRPRET 218


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 27/111 (24%), Positives = 46/111 (41%)
 Frame = +3

Query: 135 HSTYAHKSDNDCPVKNCKQNTRRLAISEWPLWQQRVSDLCRSDARRQNRGHTTGQRRRVQ 314
           H T  H+S    P +  +  T R   S     +       RS  R +   H +  R +  
Sbjct: 39  HETSRHESS---PHETSRHETSRHETSRHERSRHETRQHERS--RHKTSRHESS-RHKTS 92

Query: 315 GIGRTRHRRARVHSARLVQERGQTALHDVTIIVTRHGQEQ*RRASRETCTH 467
             GR+RH+ +R  ++R  + R +T  H+     +RH   +  ++  ET  H
Sbjct: 93  RHGRSRHKTSRHETSRHERSRHETRQHE----RSRHKTSRHEKSRHETSRH 139


>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
          Length = 1046

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -1

Query: 338 PMSRATDALDSPSLTRCMA--SILSPGVRA-A*VAYPLLP*WPLAYCEPACVLFTIFDRA 168
           P+ RAT   DS SL RC+   S  S  + A +    P+         EPA   F    + 
Sbjct: 27  PLRRATVPSDSKSLNRCLGLFSYYSQWIPAYSDRIKPITSCKVFPLPEPAVAAFESIKKT 86

Query: 167 VVIAFMSVR*MDESQPIKI 111
           V  AF+S   +DES P ++
Sbjct: 87  VEEAFVSA--IDESIPFEV 103


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 277  IEAIQRVNDGESKASV-ARDIGVPESTLRGWCKNEDKLRYM 396
            +  +++++    K S   +DIGV E+ + GW +   KLR M
Sbjct: 1004 LNVVKQLSHANKKLSAHLKDIGVSENEIIGWNEEVQKLREM 1044


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
 Frame = -2

Query: 460 HVSLEARRHCSCPCRVTI-----IVTSCS-AVCPRSCTSR-AEWTLARLC--LVRPMPWT 308
           H +L  RR+   PCR T+      +  C   + PR CT R   +TL R C   +RP  +T
Sbjct: 101 HYTLRPRRYTLRPCRYTLRPCRYTLRPCRYTLRPRYCTLRPCRYTL-RTCRYTLRPRHYT 159

Query: 307 LR 302
           LR
Sbjct: 160 LR 161


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 307 ESKASVA-RDIGVPEST-LRGWCKNEDKLRYMTSRLSSPDTDKSND 438
           +SK  V  +D   P S  + G   ++D+L Y   R SS  TDK+ND
Sbjct: 609 KSKEGVPLKDYATPSSLPVNGSSNSQDELDYDVPRPSSMVTDKNND 654


>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 269 ATKSRPYNGSTTESPRHRSHET*ACQSPLCAAGAR 373
           AT S+P  G+TT + R  SH    CQ+ +C    R
Sbjct: 345 ATDSQPPYGATTSTNRFHSHARKTCQN-VCICATR 378


>SB_39700| Best HMM Match : MBT (HMM E-Value=6.6)
          Length = 426

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 286 IQRVNDGESKASVARDIGVPESTLRGW 366
           +QR + G+ K ++AR+I    +TLRG+
Sbjct: 156 LQRPHGGDLKETMAREIAAKATTLRGY 182


>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
          Length = 524

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 25/88 (28%), Positives = 37/88 (42%)
 Frame = +3

Query: 159 DNDCPVKNCKQNTRRLAISEWPLWQQRVSDLCRSDARRQNRGHTTGQRRRVQGIGRTRHR 338
           +N C V           ++ WP+ +  +    +S   R++R H   + R      R   R
Sbjct: 434 ENPCVVTRGDSWVANKRLNPWPVNEDDIRRTKKSTPPRRSR-HPPRRSRHPPRRSRHPPR 492

Query: 339 RARVHSARLVQERGQTALHDVTIIVTRH 422
           R+R H  R  Q R Q    DV I+ TRH
Sbjct: 493 RSR-HPPRR-QRRLQGLRGDVDIMSTRH 518


>SB_1732| Best HMM Match : GETHR (HMM E-Value=1.7e-06)
          Length = 154

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 246 DLCRSDARRQNRGHTTGQRRRVQGIGRTRHRRARVHSARLVQERGQTALHDVT-IIVTRH 422
           D  R D  R ++      R     + +TRH + R+   R  + R     HD T +  TRH
Sbjct: 25  DKARLDKTRHDKTQLDKARHDKTRLDKTRHDKTRLDKTRHDETRLDKTRHDATRLDKTRH 84

Query: 423 GQ 428
            +
Sbjct: 85  DE 86


>SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)
          Length = 493

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 120 NKNIVWMRSARHVSLISQMRSQVTERRRA*RDAPIGTYVA 1
           NKN+   +  +H+  I ++R +V   +R   D  +GT++A
Sbjct: 317 NKNLDGTKKGKHIHEIRRVRREVQRPKRWESDENLGTHMA 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,002
Number of Sequences: 59808
Number of extensions: 409638
Number of successful extensions: 1347
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)