Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0204
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    33   0.12 
Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    31   0.86 
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
 Frame = +3

Query: 231 QQRVSDLCRSDARRQNRGHTTGQRRRVQGIG---RTRHRRARVHSARLVQERGQTALHDV 401
           + R S   RS +R ++R    G RRR +      RT  RR+     R  + R + A    
Sbjct: 42  KDRKSSSRRSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSPSRERRRSRSRDRGAPRRR 101

Query: 402 TIIVTRHGQEQ*-RRASRETCTHRVPGRALTPRALRPDLXAASIPTSTATQLPLAPADAP 578
           +   +R  +    RR  R T   R PGR   PR+  P      +        P  P +A 
Sbjct: 102 SRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRHSP--PKNAK 159

Query: 579 VELTTKRSE 605
           +ELT +  +
Sbjct: 160 LELTAEERD 168


>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 280 EAIQRVNDGESKASVARDI-GVPESTLRGWCKNEDKLRYMTSRLSSPDTDKSNDGEPL 450
           EA++ V  GE     A    GVP STL    K  + +R     L S D+  S DG  L
Sbjct: 350 EAVRSVRRGEMTVHRAGSFFGVPHSTLEYKVKERNLMRKKKDCLYSHDSSTSEDGSQL 407


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 280 EAIQRVNDGESKASVARDI-GVPESTLRGWCKNEDKLRYMTSRLSSPDTDKSNDGEPL 450
           EA++ V  GE     A    GVP STL    K  + +R     L S D+  S DG  L
Sbjct: 350 EAVRSVRRGEMTVHRAGSFFGVPHSTLEYKVKERNLMRKKKDCLYSHDSSTSEDGSQL 407


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 271 DKIEAIQRVNDGESKASVARDIGVPESTLRGWCKNEDKL 387
           +K+  I    +  ++A+  R+  V ES++R W KNE+KL
Sbjct: 25  EKLAIISHAKNHGNRAA-GREFNVAESSIREWRKNENKL 62


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 280 RFCRRASERHRSLTLCCHNGHSLIASRRVFCLQ 182
           R C   ++  RSL + CHN  ++ + + +FC Q
Sbjct: 831 RMCDEKTKWERSLVVKCHNVRTVSSRKEMFCAQ 863


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 280 RFCRRASERHRSLTLCCHNGHSLIASRRVFCLQ 182
           R C   ++  RSL + CHN  ++ + + +FC Q
Sbjct: 831 RMCDEKTKWERSLVVKCHNVRTVSSRKEMFCAQ 863


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,174
Number of Sequences: 27780
Number of extensions: 261916
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)