Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0204
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.027
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 0.027
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 262 TPGDKIEAIQRVNDGESKASVAR-DIGVPESTLRGWCKNE 378
           +P D   A++ +  G++    A  + G+P  TL G CK E
Sbjct: 521 SPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKRE 560


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 259 ERHRSLTLCCHNGHSLIASRRVFCL 185
           E HR+    CH+G SL  SR + CL
Sbjct: 130 ELHRA---ACHSGSSLTKSRLMRCL 151


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 107 TIFLLVGIRPFNVRS*KR*RLP--CQKL*TKHTPARNKRVAIMATKGKRPMPL*RPATKS 280
           +I + V I  +N R  +  R+P   +K+  K+ P          T+ +  M +      +
Sbjct: 310 SILVTVIIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPT 369

Query: 281 RPYNGSTTESPRH 319
             Y+GS TE P+H
Sbjct: 370 STYSGSPTELPKH 382


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 408 IVTRHGQEQ*RRASRETCTHRVPGRALTPRALRPDLXAASIPTSTATQLPLAPADAPV 581
           I+++H Q+           H +PG A   R        A+  T  +  LP +PAD+ V
Sbjct: 194 ILSQHPQQHGLGVQNGYGRH-LPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGV 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,715
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)