Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0204
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30860.1 68417.m04381 SET domain-containing protein low simil...    28   4.2  
At5g18980.1 68418.m02255 expressed protein                             28   5.6  
At1g15030.1 68414.m01796 expressed protein                             28   5.6  
At5g36650.1 68418.m04383 hypothetical protein                          27   7.4  
At1g60570.1 68414.m06819 kelch repeat-containing F-box family pr...    27   7.4  

>At4g30860.1 68417.m04381 SET domain-containing protein low
           similarity to IL-5 promoter REII-region-binding protein
           [Homo sapiens] GI:12642795; contains Pfam profile
           PF00856: SET domain
          Length = 497

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 430 SCPCRVTIIVTSCSAVCPRSCTSR 359
           SC CRV  I  S    CP SC +R
Sbjct: 297 SCVCRVQCISCSKGCSCPESCGNR 320


>At5g18980.1 68418.m02255 expressed protein
          Length = 835

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +1

Query: 286 IQRVNDG----ESKASVARDIGVPESTLRGWCKNED 381
           ++R++D      S+ + ARD  VPE+TL  W KN D
Sbjct: 169 LKRISDSIFKPRSREATARDCVVPETTLETW-KNSD 203


>At1g15030.1 68414.m01796 expressed protein
          Length = 360

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = +1

Query: 283 AIQRVNDGESKASVARDI---GVPESTLRGWCKNEDKLRYMTSRLS----SPDTDKSNDG 441
           ++Q    GE   S  RD    G    + RG C +++++     +LS      +   S+DG
Sbjct: 138 SLQARRQGEESESDFRDSSSEGSSSESERGLCYSKEQISARMDKLSLRKEHQEDSSSDDG 197

Query: 442 EPLEKRARTV 471
           EPL  + R +
Sbjct: 198 EPLSSQGRLI 207


>At5g36650.1 68418.m04383 hypothetical protein
          Length = 158

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 228 WQQRVSDLCRSDARR----QNRGHTTGQRRRVQGIGRTRHRRARV 350
           W+ R  D+ RS  +R    +NR      RRR + IG   +RR ++
Sbjct: 110 WRIRGGDVIRSKKKRGGGEENRSEKKRSRRRGKQIGEEENRRKKI 154


>At1g60570.1 68414.m06819 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 381

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 253 HRSLTLCCHNGHSLIASRRVFCLQFLTGQSLSLL 152
           +RSL+L C   HSL+ S  ++  + L+G + + L
Sbjct: 42  YRSLSLVCKRFHSLLTSGEIYRFRSLSGYTENCL 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,710,653
Number of Sequences: 28952
Number of extensions: 235947
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)