Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0203
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    29   0.49 
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   2.6  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   7.9  

>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 323 HLHHSGTCGHDTWLTLFLYIQLNDNFEHFVSTYNYNQFYVINK 195
           ++ H  T  ++TWL  ++    ND+  HF+   N  Q YV NK
Sbjct: 145 YMPHCPTSLYETWLAAYV----NDDPRHFIMCGNNLQLYVDNK 183


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 254 HSVECTKTMLTTCRDHTSLNDVSGRTCHKFHAITTVI 364
           HS   + T  ++   H+S+N  S  + + F ++TT I
Sbjct: 25  HSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPI 61


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 266 IQLNDNFEHFVSTYNYNQFYVINKC 192
           I LND+ + F S  N+ +FY  N C
Sbjct: 353 IVLNDHDQIFESLLNFAKFYSTNTC 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,395
Number of Sequences: 5004
Number of extensions: 56796
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)