Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0203
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    30   2.0  
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431...    29   4.7  
01_07_0205 - 41978437-41980599,41980805-41981215                       29   4.7  

>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 221 SYM*KRNVQNCHSVECTKTMLTTCRDHTSLNDVSGRTCHKF 343
           SYM K      H   C+K ++    DH+    + GRTCH+F
Sbjct: 261 SYMEKFQTCKKHQGTCSKDLMFNISDHS----LVGRTCHRF 297


>07_03_0451 +
           18340166-18340533,18340576-18341006,18343057-18343184,
           18343329-18343958,18344761-18345480
          Length = 758

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 191 NTC*SHKTDYSYM*KRNVQN-CHSVECTKTMLTTCRDHTSLNDVSGRT 331
           NTC +++ D   +   +V     S++  +TML  C D  +L D  GRT
Sbjct: 383 NTCAAYQPDAEGLYPIHVAALADSLDVVRTMLQKCPDCATLRDAKGRT 430


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 432 YSSARLKVFFSMLIIGCSKTIICITVVIA*NL*HVRPLTSFRDVWSRHVVNIVF 271
           + S  ++    M I+ C   + CI ++ A NL ++R L S  + +  +  N+ F
Sbjct: 469 FGSPHVQSLHHMSIVSCRNKVTCIPLLPAPNLPNLRTLLSLEEQYPLYEWNVDF 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,216
Number of Sequences: 37544
Number of extensions: 280905
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)