Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0203
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73750.1 68414.m08539 expressed protein contains Pfam profile...    30   1.7  
At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    28   5.2  
At2g33585.1 68415.m04116 expressed protein                             28   5.2  

>At1g73750.1 68414.m08539 expressed protein contains Pfam profile:
           PF00561 alpha/beta hydrolase fold
          Length = 452

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 281 LTTCRDHTSLNDVSGRTCHKFHAITTVIHIIVL 379
           LTT  DH  L D +G  C+K H   T + I+ L
Sbjct: 353 LTTAVDHGGLRDRTGTFCYKDHISKTNVPILAL 385


>At2g38250.1 68415.m04697 DNA-binding protein-related contains
           similarity to DNA-binding protein GI:170271 from
           [Nicotiana tabacum]
          Length = 289

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 226 YVETKCSKLSFS*MYKNNVNHVS*PHVPE*CKWSYMS*VSRDYNCNT 366
           ++ETK +KL +  +  N +   S P  PE CK  + + V+R   C T
Sbjct: 61  FMETKRNKLLWE-VISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCET 106


>At2g33585.1 68415.m04116 expressed protein
          Length = 193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 463 VRLFISAIGLLYGIVTRDKCNYKAIEYYIFNC 558
           +RL +SA GL +G V +   N   I  + F+C
Sbjct: 33  IRLTVSATGLAFGSVHQANANQNQIACFYFSC 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,417
Number of Sequences: 28952
Number of extensions: 257215
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)