Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0202
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 86  LYKMVQRTFPP-HHRGTLKW 142
           LYK +++ FPP    G L W
Sbjct: 286 LYKKIKKAFPPLSLHGQLLW 305


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 240 CDPRRAADLSHMNTPAKVSGHKGPEELSA 326
           C P       + N PAK++G K  + L A
Sbjct: 489 CSPYIGWQKVYENKPAKIAGDKKGQVLGA 517


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 248 PACSRPFPHEHPSQGQRPQG 307
           P   +P   + P+QGQ+P G
Sbjct: 203 PPHQQPPIQQQPNQGQQPPG 222


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 420 IVRDIALSIAQNAPKAIVAII 482
           ++ D+ALS  QN P  I+  I
Sbjct: 197 VISDLALSKCQNTPIGILGRI 217


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 420 IVRDIALSIAQNAPKAIVAII 482
           ++ D+ALS  QN P  I+  I
Sbjct: 197 VISDLALSKCQNTPIGILGRI 217


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 248 PACSRPFPHEHPSQGQRPQG 307
           P   +P   + P+QGQ+P G
Sbjct: 205 PPHQQPPIQQQPNQGQQPPG 224


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 400 RSSRVIPGLRGTPAGMTTTSASLM 329
           RS+  IPG   TP   T  S  +M
Sbjct: 85  RSAGSIPGASSTPENKTFPSIQVM 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,850
Number of Sequences: 336
Number of extensions: 3626
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)