Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0202
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...   111   1e-25
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    51   1e-07
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    28   0.97 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.2  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   5.2  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   5.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   6.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.0  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score =  111 bits (266), Expect = 1e-25
 Identities = 54/97 (55%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
 Frame = +3

Query: 246 PRRAADLSHMNTPAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASI 422
           P  AAD+ H+NT + V G+   ++ L  A+  ADVV+IPAGVPRKPGMTRDDLF TNASI
Sbjct: 66  PGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASI 125

Query: 423 VRDIALSIAQNAPKAIVAIITNPVNSTVPLPLKCSRR 533
           VRD+A +  +  P+A   ++TNPVNSTVP+  K   R
Sbjct: 126 VRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALER 162



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +1

Query: 103 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDI 234
           ++FSTTS R FK         IGQPL++LLK N  V+ LAL+DI
Sbjct: 19  RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDI 62



 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 509 IASEVLKKAGVYDPNRVLGVTTLDVV 586
           I  + L++ GV+ P  + GVTTLD V
Sbjct: 155 IFKKALERVGVHQPKHLFGVTTLDSV 180


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 36/95 (37%), Positives = 46/95 (48%)
 Frame = +3

Query: 237 ACDPRRAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNA 416
           A D   AA LSH  T   +  +K         KDA  VVI AG  +KPG TR DL   N 
Sbjct: 62  AMDLNHAAPLSH-ETRVYLGDYKD-------CKDATAVVITAGKNQKPGETRMDLLKANI 113

Query: 417 SIVRDIALSIAQNAPKAIVAIITNPVNSTVPLPLK 521
           SI ++I   + +    AI+ + TNPV+      LK
Sbjct: 114 SIFKEILREVTKYTKDAILLVATNPVDVLTYATLK 148


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 452 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 357
           L NG   + D  + SV  V+TGH+R     CW
Sbjct: 43  LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 81  PCCTKWCKELFHHITEEL*SGGRWCR 158
           P C  WC  ++  IT+   + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 69  KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 167
           K C+ C  + C+  +HHI E+L      CRR Y
Sbjct: 33  KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 231 HSACDPRRAADLSHMNTPAKVSGH 302
           +S CDP  A  L  +  P  ++GH
Sbjct: 412 YSICDPNTAKALKSLRIPLAIAGH 435


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -2

Query: 313 SGPLWPLTLAGVFMWERSAARRGSQALCRIKPAWSPEDSASVEGPKAGRYHRRHQRPPL* 134
           SG L+ L     FM++    R   ++  ++  +WS +D+         + H     P L 
Sbjct: 794 SGLLFSLRAHDTFMFDGLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQEHLSKNLPTLN 853

Query: 133 SSS 125
           +SS
Sbjct: 854 TSS 856


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 586 DYVQSGDAEHAVRVVHSRLLEHFRGNGTVEL 494
           +Y  S DAE A   VH R LE  RG G + +
Sbjct: 53  EYEDSRDAEDAYYEVHGRRLE--RGGGVLRV 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,582
Number of Sequences: 5004
Number of extensions: 57158
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)