Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0202
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                79   2e-15
SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)               31   1.0  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.1  
SB_58558| Best HMM Match : EGF (HMM E-Value=0)                         29   4.1  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          28   7.2  
SB_36282| Best HMM Match : HHH (HMM E-Value=7.4)                       27   9.5  

>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 34/55 (61%), Positives = 47/55 (85%)
 Frame = +3

Query: 288 KVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 452
           +V+ H+GP++L AA++   VV IPAGVPRKPGMTRDDLFNTNASIV++++ + A+
Sbjct: 55  QVTSHQGPDDLKAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACAK 109


>SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)
          Length = 696

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 305 LVAADLGWGVHVGKVGCTPGVTGA-MSYKASLVTRGFCFSRRAKGW 171
           L+  +  WG+ +G+  C  G     ++ K  L+ +G+C+ R+ + W
Sbjct: 548 LIRGEEDWGILMGRKVCLHGNQAQILALKLFLMGKGYCYVRKYRDW 593


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -1

Query: 518 QRQWHCRVNRVCDDGHNSFGCILSNGQS----NVTDNGSISVE*V--ITGHSRFTGYSC 360
           + Q  C  +  C DG NS+ C  + G +    NVT N  IS   +   T H    GYSC
Sbjct: 669 ETQSPCSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCIHGATCHDGLLGYSC 727


>SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 894

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 153 CRRWYRPAFGPSTEAESSGDQAGFIRHSACDPRRAADLSHMNTPAKVSGHK 305
           CR+ + P         S G Q+GFI+ S        D++H    A+++G K
Sbjct: 298 CRKGFNPPPKIPCHEHSLGVQSGFIKDSQMSASTIWDINHGAENARLNGEK 348



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 153 CRRWYRPAFGPSTEAESSGDQAGFIRHSACDPRRAADLSHMNTPAKVSGHK 305
           CR+ + P         S G Q+GFI+ S        D++H    A+++G K
Sbjct: 584 CRKGFNPPPKIPCHEHSLGVQSGFIKDSQMSASTIWDINHGAENARLNGEK 634


>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 503 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 345
           CR N  C D HN++ C  + G   V  N  I++   I    +  G+ C D  N
Sbjct: 168 CRNNGTCTDMHNAYRCQCTQG--FVGKNCQININDCIPDPCQNGGWCCCDLVN 218


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/63 (22%), Positives = 23/63 (36%)
 Frame = -2

Query: 373  RGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSAARRGSQALCRIKPAWSPEDSA 194
            +G P      ++   A  S   PLW      + +W   +      A+    P W+  DS+
Sbjct: 2999 KGNPWTTMYEASPPWATMSVGSPLWATISEAILLWSTMSEGNPWTAMSEASPPWTTIDSS 3058

Query: 193  SVE 185
              E
Sbjct: 3059 DTE 3061


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -1

Query: 503 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 345
           C     C DG N F C+ + G +    + +I  +   +G     G +C D  N
Sbjct: 636 CAGTGTCKDGINDFSCVCNTGYTGAKCDSNID-DCAASGQPCQNGATCKDGVN 687


>SB_36282| Best HMM Match : HHH (HMM E-Value=7.4)
          Length = 152

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -2

Query: 502 VELTGFVMMATIALGAF*AMDKAMSRTMEALVLNRSSRVIPGLRGTPAGMTTTSASLMAA 323
           V+ T F ++ATI  GAF  + +   ++ + +   + + ++P        +     S++ +
Sbjct: 85  VKFTDFQILATIGKGAFGHVLQVQHKSTDEVFAMKHNEILP---SALCDLKQVGLSILQS 141

Query: 322 DSSSGP 305
           D  SGP
Sbjct: 142 DRKSGP 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,876,168
Number of Sequences: 59808
Number of extensions: 492288
Number of successful extensions: 1443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)