Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0202
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate dehydr... 138 2e-33
Z81129-1|CAB03408.1| 350|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical pr... 29 3.6
U88311-5|AAB42343.1| 531|Caenorhabditis elegans Udp-glucuronosy... 28 4.8
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 28 4.8
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 28 4.8
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 28 4.8
Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormo... 28 6.3
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein... 27 8.4
>AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate
dehydrogenase protein 1 protein.
Length = 341
Score = 138 bits (335), Expect = 2e-33
Identities = 64/89 (71%), Positives = 79/89 (88%)
Frame = +3
Query: 246 PRRAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIV 425
P AADLSH+++ AKV+ H GP+EL AA+++ADV+VIPAGVPRKPGMTRDDLFNTNA IV
Sbjct: 66 PGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIV 125
Query: 426 RDIALSIAQNAPKAIVAIITNPVNSTVPL 512
RD+A IA+ +PKA++AIITNPVNSTVP+
Sbjct: 126 RDLAAVIAKASPKALIAIITNPVNSTVPI 154
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = +2
Query: 509 IASEVLKKAGVYDPNRVLGVTTLDVVALPPSSARINGVD 625
IASEVLKKAGVYDP RV GVTTLDVV + + G D
Sbjct: 154 IASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHD 192
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 166 IGQPLALLLKQNPLVTRLALYDI 234
IGQPL LLLKQ+PLV LALYD+
Sbjct: 40 IGQPLGLLLKQDPLVAHLALYDV 62
>Z81129-1|CAB03408.1| 350|Caenorhabditis elegans Hypothetical
protein T23F1.3 protein.
Length = 350
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 149 LVPPVVSASLWPFY*SRILW*PGWLYTT*RL*PPACSRPF 268
+ P ++ +WP+ + W GWLY+ + PP S F
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYSVVGMYPPFDSISF 304
>Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical
protein ZK1067.4 protein.
Length = 541
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 133 SSSVMWWKSSLHHFVQQGRQV 71
S ++WWKS +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140
>U88311-5|AAB42343.1| 531|Caenorhabditis elegans
Udp-glucuronosyltransferase protein25 protein.
Length = 531
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 177 FGPSTEAESSGDQAGFIRHSACDPRRAADLSHM 275
FGP + +S G Q GFI+ + D A LS++
Sbjct: 471 FGPFPQMDSYGRQLGFIQRNLIDIYAAISLSYL 503
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 522 CSRRRECTTRTACSASPLWT*SRCHLR 602
C+ R C T C +P WT C LR
Sbjct: 386 CNGRGRCDTDGRCRCNPGWTGEACELR 412
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 522 CSRRRECTTRTACSASPLWT*SRCHLR 602
C+ R C T C +P WT C LR
Sbjct: 328 CNGRGRCDTDGRCRCNPGWTGEACELR 354
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 522 CSRRRECTTRTACSASPLWT*SRCHLR 602
C+ R C T C +P WT C LR
Sbjct: 510 CNGRGRCDTDGRCRCNPGWTGEACELR 536
>Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical
protein C14H10.4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 149 LVPPVVSASLWPFY*SRILW*PGWLYTT*RL*PPACSRPF 268
L+ PVV AS + F+ S+ W GWLY+ PP S F
Sbjct: 265 LLCPVV-ASFFHFFFSKFSWQTGWLYSFICFYPPFDSISF 303
>AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 204 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 432 IALSIAQNAPKAIVAIITNPVNSTVPLPLKCSRRRECT 545
+ L + PK+I A +T+ +N + L LK + R+CT
Sbjct: 149 VVLPRIKEPPKSIEAQVTDLINHLMHLDLKITTFRDCT 186
>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
protein.
Length = 1376
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 292 TLAGVFMWERSAARRGSQALCRIKPAWSPEDSASVEGPKAG 170
TL G+ MWERS+ +ALC+I + ++ +G ++G
Sbjct: 1073 TLEGMIMWERSS----REALCQICKSMDGDEMLVCDGCESG 1109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,646
Number of Sequences: 27780
Number of extensions: 355670
Number of successful extensions: 1004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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