Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0201
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   4.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -3

Query: 169 ASMATETGPTVA-----TASISFCSSPSGMSTKPTSSAPVFLGLYLHLSS 35
           A + T+T PT       T++ S  SSPS  +      +P ++   LH+S+
Sbjct: 148 APILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVST 197


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 25   TRELTTSAGTIPRTPVLXTWA 87
            T  + T+AGT P   +  +WA
Sbjct: 1022 TNNIPTNAGTTPGAILAFSWA 1042


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 108 DEQKLMEAVATVGPVSVAIDASHTSFQLYSSG 203
           D QKL   +A  G     +DAS       SSG
Sbjct: 246 DPQKLAIGIAFYGHAFTLVDASQHDLGSPSSG 277


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 87  SPRXQHRCSWDCTCTC 40
           SPR Q R +   TC C
Sbjct: 278 SPRSQRRYTGRATCDC 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,976
Number of Sequences: 336
Number of extensions: 1189
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)