Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0201
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   2.9  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   3.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   5.0  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    24   6.7  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    24   6.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   6.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.8  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    24   8.8  

>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 313 PRVLHEPVVHALLVGAVT 260
           P V H P+ H LL G VT
Sbjct: 198 PLVAHSPLAHGLLTGRVT 215


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 169  ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 29
            +S A  T P + ++++   S+P   ST   +S P+     ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  VDIPDGDEQKLMEAVATVGPVSVAID 167
           +D+P G  + L+ A  T  P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 27  EGVDDKCRYNPKNTGAXDVGFVDIPDGDEQKLMEAVATVGPVSVAIDAS 173
           +GVDDK  +         +GF D  + D   ++  +  +G + V  D S
Sbjct: 306 DGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMGNIDVGADRS 354


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 172 EASMATETGPTVATASISFCSSPSGMSTKPT 80
           +A  AT   P+   +SI   ++PS  STKP+
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPS 483


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 PVSVAIDASHTSFQLYSSGVYNEEECSSTXLDHG 248
           P S + D    SF  +SSG +++E  + +  D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 184 KLVCEASMATETGPTVATASISFCS-SPSGMSTKPTSSAPVFLGLYLHLSSTPS 26
           ++V   +  + TG    T+S +  S  PS   T PTSS+ +     L  +S+P+
Sbjct: 616 EIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETSSPA 669


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 39  DKCRYNPKNTGAXDVGFVDIPDGDEQKLMEAVATVGPVSV 158
           +K  Y   +T A     VD+P   E +    V   GP S+
Sbjct: 112 NKTSYEQADTNATSKSLVDLPVSLEVRGRNTVTFYGPTSI 151


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 215 GGVLLH*XGPRGSVVGYGTDEQGVDYW 295
           GGV +    P   ++ +GTD   V++W
Sbjct: 185 GGVNVIDINPMHQLLAFGTDAGSVEFW 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,647
Number of Sequences: 5004
Number of extensions: 19898
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)