Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0201
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   0.88 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   0.88 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 102 DGDEQKLMEAVATVGPVSVAIDASHT 179
           DG++QK    + +V P+SVA +  H+
Sbjct: 374 DGEKQKTDRLLYSVLPISVANELRHS 399


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 102 DGDEQKLMEAVATVGPVSVAIDASHT 179
           DG++QK    + +V P+SVA +  H+
Sbjct: 374 DGEKQKTDRLLYSVLPISVANELRHS 399


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 157 TETGPTVATASISFCSSPSGMSTKPTSSAPV 65
           ++  P   +A +S   SP+G    P++ AP+
Sbjct: 387 SQVSPVSMSALVSAVRSPAGGQLPPSAGAPM 417


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 105 HRGCPRSPRXQHRCS 61
           + G PRSP    RCS
Sbjct: 319 NNGSPRSPESNSRCS 333


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 39   RQLPRRGRSAR 7
            + LPRRGRS+R
Sbjct: 1836 KSLPRRGRSSR 1846


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 39   RQLPRRGRSAR 7
            + LPRRGRS+R
Sbjct: 1832 KSLPRRGRSSR 1842


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +2

Query: 293 WLVKNSWGRSL 325
           WL  + WGR +
Sbjct: 227 WLASDGWGRQI 237


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +2

Query: 293 WLVKNSWGRSL 325
           WL  + WGR +
Sbjct: 317 WLASDGWGRQI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,473
Number of Sequences: 438
Number of extensions: 1489
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)