Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0200
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   2.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   3.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   6.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   8.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   8.8  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.8  

>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 281 DESPHAESNFNCTVFNKKMACKTNICKRLTSEEDQRKQCNIKVCNDCSCTPAQSKELKCD 460
           DE  ++    N T+F+K++  K N  + +   E + ++   K  N C C P +S E   D
Sbjct: 199 DEVNYSLPQKNITIFSKEL--KENEFESINEGETEEEKA--KTSNVCVCIPCKSAEQITD 254

Query: 461 KSG 469
             G
Sbjct: 255 LKG 257


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 610 FLQSVYRDIPVYHICQFHHTCSRHSEGAFHLPYKANAWLSFSRYTNATRFVT 455
           FL++VY    +Y   ++  T SR S G++HL      +L+ SR T   R +T
Sbjct: 624 FLKNVYDIEFIYDNTRYRFTASRSSPGSYHL------FLNGSRCTAGVRSLT 669


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -3

Query: 578 LSHLPVSSHLQSSQRRSFPSSLQSK-----RMAFLQSVHKCNQICHISVL*TEQGYMSNH 414
           LSHL  SS +  S  +S  + L SK     ++  L   +    +   SVL +  G MSNH
Sbjct: 138 LSHLLPSSLINLSNGQSRRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLLGEMSNH 197

Query: 413 CIP 405
           C P
Sbjct: 198 CSP 200


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 DESPHAESNFNC-TVFNKKMACKTNICKRLTSEEDQRKQCNIKVC 412
           +  P    N  C  + NK ++CKT+ C++L   + + +    K C
Sbjct: 687 ENQPCYRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKEC 731


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
 Frame = -3

Query: 707 SHFSSLD*AGVHEQSSHTFILPLSSLHRQ---IQGFPSVGIQRHSGL-SHLPVSSHLQSS 540
           S+F++ D   +   S+ + + P+   H++   +QGFPS   Q+H  L S+  V ++  SS
Sbjct: 115 SNFNTNDLNQMTSSSNLSTVTPIKQDHQKPMNLQGFPS-AYQQHQYLQSNHNVPTNNSSS 173

Query: 539 QRRSFPSSLQSKRMA---FLQSV 480
              S   S+QS   A   FL SV
Sbjct: 174 ATSSTKPSVQSVGQASYPFLSSV 196



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 653 FILPLSSLHRQIQGFPSVGIQRHSGLSHLPVSSHLQSSQRRSFPSSLQS 507
           F L  +  +R+ +G+P+   Q  +  S  P    + S+Q+   P+S+ S
Sbjct: 52  FCLNCTKTNRECEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIAS 100


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -3

Query: 650  ILPLSSLHRQIQGFPSVGIQRHSGLSHLPVSSHLQSSQRRSFPSSL--QSKRMAF-LQSV 480
            + PL ++  Q++G   VG+      S +  S  + SSQ  S   +L    K ++   + V
Sbjct: 1498 VYPLQNV--QVEGIERVGVNERQWRSWILASQSILSSQNGSITDALLVLKKNISMHFEGV 1555

Query: 479  HKCNQICHISVL*TEQGYMSNHC 411
             +C  IC+ SVL  E+   +  C
Sbjct: 1556 EEC-AICY-SVLSVERTLPNKRC 1576


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 569 LPVSSHLQSSQRRSFPSSLQSKRMAFLQSVHKCN 468
           L + SHLQ   R  FPSS+  K  A   ++ + N
Sbjct: 812 LEMDSHLQDYLRSVFPSSVMGKENASEDTILESN 845


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 710 LSHFSSLD*AGVHEQSSHTFILPLSSL 630
           L H S L+ +G+H+  S  F  P S++
Sbjct: 333 LQHASKLENSGIHQSKSSVFPQPASAM 359


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 535 RCDDCKCDETGKCDKPECLCIPTEGKPCICLC 630
           RCD CK       D    L I   G+P +C C
Sbjct: 474 RCDLCKAGFVRHHDLKRHLRIHENGRPYVCEC 505


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 434 AQSKELKCDKSGCICVPTEGKPCVCFVRKMES 529
           A SK  KCD    +   ++     CFVR++E+
Sbjct: 10  ADSKCSKCDNKATVLTKSDAVCDSCFVRRIEN 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,908
Number of Sequences: 5004
Number of extensions: 61475
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)