Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0200
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989...    36   0.046
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32...    31   0.74 
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    30   1.7  
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871           29   3.0  
10_01_0048 - 659107-660402,661650-661867,662299-662335                 29   4.0  
07_03_0097 + 13372270-13372399,13372958-13373457                       29   4.0  
05_04_0407 - 21040536-21041352,21041452-21042044                       29   5.2  
11_01_0309 + 2312786-2313211,2313311-2313527,2313613-2313731,231...    28   6.9  
08_02_0311 - 15635165-15635590,15635777-15638698                       28   9.2  
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482...    28   9.2  
03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371           28   9.2  

>10_06_0035 -
           9896289-9896390,9897394-9897503,9897587-9897715,
           9898734-9898800,9898888-9898970,9899878-9899959,
           9900049-9900125,9900206-9900289,9900368-9900437,
           9900580-9900668,9900921-9901613,9902833-9903142
          Length = 631

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 535 RCDDC-KCDETGKCDKPECLCIPTEGKPCICLCSDDKGNIKVCDDC-SCTPAQSK 693
           +C+D  +C E   C  PEC C  T G    C CS D   IK  D C S T  Q K
Sbjct: 516 KCEDINECKEKKACQCPECSCRDTWG-DYECTCSGDLLYIKEHDTCISKTAVQGK 569


>01_01_0042 +
           317586-317640,318128-318185,318799-319236,320426-320467,
           320468-320648,320838-320867
          Length = 267

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -3

Query: 224 AAAAVAWRCESRR------DAVMPVKTSAW--QYFYAESYRLRQICYAVSGFVVLTKTLF 69
           AAAA  WR ++ R      D   P  T  W      A  Y LR   Y V GF ++T  L 
Sbjct: 76  AAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALR--VYLVQGFYIVTYGLG 133

Query: 68  *YTLNLFILYKNLML 24
            Y LNL I + + M+
Sbjct: 134 IYLLNLLIGFLSPMV 148


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 571 CDKPECLCIPTEGKPCICLCSDDKGNIKVCDDCSCTPAQSKELKCDKS 714
           C    C+ +   G  C C  + D GN  + DDC      + +  C +S
Sbjct: 257 CGSNNCIDVANGGYSCACPGNSDDGNPYLLDDCKQEFNPTPKKNCSRS 304


>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
          Length = 177

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 329 KKMACKTNICKRLTSEEDQRKQCNIKVCNDCSC---TPAQSKELKCDKSGCICVPTEGKP 499
           KK  CK    K   + ++  ++CN+K+   C C   TP     + C   G IC P    P
Sbjct: 79  KKDPCKEAKEKLEKAWKEYCEKCNVKLKPGCPCSCSTPCSFPPIGCHDRG-ICPPPCPPP 137

Query: 500 C 502
           C
Sbjct: 138 C 138


>10_01_0048 - 659107-660402,661650-661867,662299-662335
          Length = 516

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = -3

Query: 302 IQRVGSRLFGEVISKASATVLDSRRLAAA---AVAWR 201
           +QR+G+ +   V + A+A  ++ RRLAAA   ++AW+
Sbjct: 370 LQRIGAGMALSVAAMAAAATVEGRRLAAAGEVSIAWQ 406


>07_03_0097 + 13372270-13372399,13372958-13373457
          Length = 209

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 407 VCNDCSCTPAQSKELKCDKSGCICVPTEGKP 499
           VC+ C   PA S    C   GC C P+   P
Sbjct: 105 VCSSCYAPPAPSS---CSSHGCSCSPSNSSP 132


>05_04_0407 - 21040536-21041352,21041452-21042044
          Length = 469

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -3

Query: 305 LIQRVGSRLFGEVISKASATVLDSRRLAAAAVAWRCESRRDAVMPVKTSAW 153
           ++QR+G+ +   ++S   A ++++RRL AA  A   +    A +PV  S W
Sbjct: 301 MLQRIGAGMVLSLVSMVIAALVETRRLRAARDAGLVDK---AGVPVPMSLW 348


>11_01_0309 +
           2312786-2313211,2313311-2313527,2313613-2313731,
           2313921-2314019,2314498-2314551,2314635-2314733,
           2314838-2314945,2315418-2315694,2316051-2316160,
           2316425-2316493,2316608-2316714,2316754-2316792,
           2317126-2317171,2317593-2317619
          Length = 598

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 703 ISVL*TEQEYMSNHRIPLYYLCHRYTGKYKVFLQS 599
           I++  T Q YM   R P   LCH+ TG  ++ LQS
Sbjct: 514 ITIASTAQTYMIKGR-PWLSLCHKKTGLIRLLLQS 547


>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 338 ACKTNICKRLTSEEDQRKQCNIKVCNDCSCTPAQSKELKCDKSGCIC 478
           AC  +  +    E+    +C+ K+C DC         L   K GCIC
Sbjct: 141 ACDGSAMRNERGEDVDPCECHFKICRDC--------YLDAQKDGCIC 179


>04_03_0972 +
           21347212-21347284,21347966-21348009,21348153-21348237,
           21348810-21349358,21350291-21350416,21350772-21350936,
           21351243-21351310,21351529-21351618,21351740-21351830,
           21352214-21352812
          Length = 629

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 625 LCSDDKGNIKVCDDCSCTPAQSKELKCDKSGCICVPTE-GKSCI 753
           +CSD+ G+ K C   +   A S  +  + +G + VP E   +CI
Sbjct: 84  VCSDENGHSKCCRYINAIIAVSSAMYANTTGILGVPAEISDACI 127


>03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371
          Length = 589

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = -3

Query: 305 LIQRVGSRLFGEVISKASATVLDSRRLAAA 216
           L++R+G  L  +V++ A+A++++SRRL  A
Sbjct: 411 LLKRMGVGLLLQVVAMATASLMESRRLGYA 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,056,365
Number of Sequences: 37544
Number of extensions: 388273
Number of successful extensions: 1145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)