Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0199
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    29   0.74 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.9  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   6.9  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   6.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   6.9  

>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 37  EDLQGSRRQTSHRTTRLFSPLIRLT 111
           +DLQG++R+TS  T R    LIRL+
Sbjct: 618 DDLQGNQRRTSPLTARTLETLIRLS 642


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 265 LCGLEMHLKQRKLCDIY*LRQFSLVSISRYLGTYGIHASS 146
           +CG+ +HL QRK+  ++    +    +   LG +G  A S
Sbjct: 510 ICGIVLHLLQRKVSRLFLDSSYYKPILDSLLGVFGFLADS 549


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 557 LVVLRLILKYINTTFLSYTHYVSVSQYFIFCCVFILYFDKFYILWAILL*ISD 715
           L  LRL++++++    ++      S  F F  + ++YF + +  W +LL + D
Sbjct: 576 LDTLRLLIEFMDPELFAHLEKTDSSNLFCFFRMLLIYFKREFD-WEVLLKLWD 627


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 597 LFYHTLTMFLFHNISYFVVCSFCILINSIFFGPSCYELATHL*FKYKIYALYNN 758
           LFY +    +F ++  ++  S+   + S+F G   +  A    F     A++NN
Sbjct: 434 LFYASGAFLMFQSMFQYLAASYPKYVASVFAGNDLFRSAMAASFPLFARAMFNN 487


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 560 VVLRLILKYINTTFLSYTHYVSVSQYFIFCCVFILYFDKFYILWAI 697
           + L   L Y+NT  + Y  +V     F+F  +++ ++  F I+WA+
Sbjct: 262 LALSKCLNYVNTVIV-YPIFV----IFVFVWIYMRHYLNFKIMWAV 302


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 136 NARENWRGFRTFLDTVRLIRVKIDAVSKY-----HRVCAVLDAFQVHTVGFIVYKENKLC 300
           NAR +       LD   L+R KI++  +Y     H  C  + A  + ++GF + +ENK  
Sbjct: 769 NARYSTSNALEILDM--LLREKIESAPRYDTLIYHSWCYYVAALVLWSIGFALDEENKKT 826

Query: 301 QYRNNI 318
           +   N+
Sbjct: 827 EEVTNL 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,495
Number of Sequences: 5004
Number of extensions: 60177
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)