Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0199
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          29   5.5  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.5  
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)                 28   7.3  

>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/65 (20%), Positives = 32/65 (49%)
 Frame = -1

Query: 436 IFISIRGISLSMLYQYCCMAST*FICKNCSH*ISTDCTTLYYFYIDIIYSPYIQ*SPLCG 257
           +++ I  +    +   C M  +  +C+ C+  +     ++Y+ Y+  ++  Y+  SP+C 
Sbjct: 209 VYVVILPVCTMFMLPVCTMFRS--LCRQCAPCLCRYVASVYHVYVASVHHVYVVMSPVCT 266

Query: 256 LEMHL 242
           + M L
Sbjct: 267 MFMSL 271


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 430 ISIRGISLSMLYQYCCMAST*FICKNCSH*ISTDCTTLYYFYIDII 293
           +S+ G++  +   YC ++   F+ K  S  +   C  L++F +DII
Sbjct: 508 LSVGGLTAKLWIAYCVLSDR-FVKKRKSMLVWMICIVLFFFIVDII 552


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 111 G*SYQRGE*SSCTVRCLTPASLKILATWSV 22
           G +Y+RG   + TV C  P  L++LA+++V
Sbjct: 218 GVNYERGSSLNVTVSCADPGGLELLASFTV 247


>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
          Length = 440

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 133 NLNKICDRLVLSKGRIV*LYGEMFDAGFPEDPRDLVRHVSGVH 5
           NL K+C  L+ +  R++    + F AG  E  R  VRH++ +H
Sbjct: 209 NLAKVCFWLLENNFRVMIAACDTFRAGAVEQLRTHVRHLNALH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,020,585
Number of Sequences: 59808
Number of extensions: 402702
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)