Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0199
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.2  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   4.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 630 HNISYFVVCSFCILINSIFFGPSCYELATH 719
           HN S F + SF   +N IF   S    +TH
Sbjct: 471 HNSSPFSIYSFLERLNLIFMSSSLQWSSTH 500


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 630 HNISYFVVCSFCILINSIFFGPSCYELATH 719
           HN S F + SF   +N IF   S    +TH
Sbjct: 509 HNSSPFSIYSFLERLNLIFMSSSLQWSSTH 538


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 644 FCCVFILYFDKFYILWA 694
           FC +F+++F+   I WA
Sbjct: 453 FCLLFLMFFECIAISWA 469


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 644 FCCVFILYFDKFYILWA 694
           FC +F+++F+   I WA
Sbjct: 506 FCLLFLMFFECIAISWA 522


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 473 YKNKIFFCNGQYNFYKYKRNFI 408
           Y NK  + N  YN   Y +N+I
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYI 121


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 660 MNTQQNMKYCETET**VYDKKVVF 589
           +N +   KYCET    +YD  + F
Sbjct: 58  LNAEGMKKYCETYKNSIYDVSMTF 81


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 473 YKNKIFFCNGQYNFYKYKRNFIKYVIPI 390
           Y N   + N  YN Y  K  +  Y+I I
Sbjct: 327 YNNYNNYNNNNYNNYNKKLYYKNYIINI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,943
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)