Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0198
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 31 0.80
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 31 1.4
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 30 2.4
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 29 3.2
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999... 29 3.2
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 29 5.6
07_01_0689 - 5218920-5220107 29 5.6
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 28 7.4
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 28 9.8
04_03_0264 - 13619329-13621708,13621742-13621830 28 9.8
03_02_0364 - 7813681-7814154 28 9.8
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 710 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTGEE 600
C++ +S CVDA + RG CK G + +P + G E
Sbjct: 273 CVSSNSYCVDATNGRGYRCKCS-DGYKGNPYITDGCE 308
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 710 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTGEEXXXXXXXXXVYH 564
CI+ +SVCV++ S G C G Q +P LL G + YH
Sbjct: 161 CISSNSVCVNSSSGPGYICNC-THGYQGNPYLLHGCQDIDECEEHENYH 208
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 710 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 606
C++ DS CVD+ + G C AG + +P LL G
Sbjct: 263 CVSRDSECVDSRNGPGYLCNCS-AGFEGNPYLLDG 296
>09_04_0563 +
18546967-18547407,18547503-18548007,18548271-18548314,
18548639-18548734,18548830-18549340,18549506-18549540
Length = 543
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 640 ATSVLHSTPRLDGASTQTESSAMQRKTQ 723
AT +L PR+DGAS+ S+A R+ Q
Sbjct: 190 ATGILQRFPRVDGASSSASSAADAREVQ 217
>03_02_0635 +
9994327-9994644,9995510-9995706,9995806-9995941,
9996019-9996270,9996356-9996588,9996695-9996812,
9996884-9997036,9997126-9997212,9997407-9997697
Length = 594
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 131 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 247
+G+YK + C Y++ D+ CPDG F+P + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463
>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
Length = 744
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 710 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 606
CI+ +S C+DA + G C+ G + +P LL G
Sbjct: 273 CISANSYCMDANNGPGYLCQCS-KGYEGNPYLLNG 306
>07_01_0689 - 5218920-5220107
Length = 395
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -2
Query: 701 LDSVCVDAPSSRGVECKT----DVAGQQSSPILLTG 606
L AP RGVEC T D+A +Q P+L+ G
Sbjct: 199 LSPATTSAPRDRGVECDTIAGFDLATEQWRPVLMDG 234
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 YAIQRKRMLSYIYLALLVAASHVQSTPAAATAQNVICK-ARNGYYKTDANCDTYIECRDY 187
+ +QR + Y+YLA+++ + + A + + RNG + A+C Y+
Sbjct: 736 FIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQ 795
Query: 188 QATNMICPDGLHFNPSVEWPA 250
T ++ + F + + PA
Sbjct: 796 VVTKVVFRRDISFKLTSKLPA 816
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 710 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 606
C++ +S CV A +S+G CK G + +P L G
Sbjct: 296 CVSSNSKCVQASNSQGYLCKCS-EGYEGNPYLPKG 329
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 361 ASPTNCGQYRTCVGGRAFDMVCP 429
A PT CG+Y C GG+ +CP
Sbjct: 304 AFPTVCGEYAICTGGQC---ICP 323
>03_02_0364 - 7813681-7814154
Length = 157
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 566 HIIQRIADSIQRSRGASETQNFSASQEGTRSAQSQRLKSGLNASPGGH 423
H+I IA + GA S+ +G RS ++ + G +PGGH
Sbjct: 27 HLI--IALLLLAGSGAGAAPEISSRADGDRSLEADAVVQGREMNPGGH 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,760,698
Number of Sequences: 37544
Number of extensions: 598140
Number of successful extensions: 1522
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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