Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0197
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    60   4e-10
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.3  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    26   4.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   5.8  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   5.8  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   7.7  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 27/72 (37%), Positives = 41/72 (56%)
 Frame = +1

Query: 280 APAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATRNILSGYVE 459
           APAVV   +DD  V    N++EL  N    E+  PA GP NPF T++  + +N ++GY E
Sbjct: 31  APAVVDNVKDDLIVSKGGNSRELARNVPVNEMVQPALGPANPFVTKEQDSIKNSITGYAE 90

Query: 460 LAHISDFQFENQ 495
             ++ +F F  +
Sbjct: 91  REYVPNFVFNQE 102


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 635  FIVSKTDLPSVSSLGVYHSRFHYSISFLLLNICRRI 528
            F+ SK +L SV+SLG ++     S  FLL N   RI
Sbjct: 1884 FLGSKVNLNSVTSLGNFNGSSPNSFLFLLKNRTMRI 1919


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 674 HFWFSFFLSRGRFFIVSKTDLPSVSSL 594
           HFW   F+S  R F+V    +P ++SL
Sbjct: 23  HFWLRSFMSNNRKFLVHIHLIPHLNSL 49


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 271 LAW-SWPGQTRINRLKMGQESFIAE 200
           L W   PG+T+  +LK GQ SF++E
Sbjct: 135 LEWVQMPGKTKPPKLKKGQISFVSE 159


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +1

Query: 436 NILSGYVELAHISD-FQFEN 492
           NI+ GY++L H+SD  Q++N
Sbjct: 413 NIIQGYLDLVHLSDQDQYDN 432


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 430 TRNILSGYVELAHISDFQFEN 492
           +++ L  Y+ LAHI +F FEN
Sbjct: 280 SKDYLLAYLPLAHILEFAFEN 300


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 595 KEDTEGKSVFETIKKR-PLDKKKENQKWTIL 684
           K   E K +F+ +K   PLDK  ++ KW +L
Sbjct: 345 KRRKEIKELFDDLKDALPLDKSTKSSKWGLL 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,691
Number of Sequences: 5004
Number of extensions: 55806
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)