Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0197
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0256 + 15898702-15900420                                         38   0.010
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712...    31   0.85 
11_01_0706 + 5811722-5814025                                           28   7.9  

>03_03_0256 + 15898702-15900420
          Length = 572

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 NPKYEELFAPAFGPENPF-QTQQMKATRNILSGYVELAHISDFQFENQRRTF 507
           NP  ++L+AP  GP++P          RN   G+VE A +  F F+ Q  TF
Sbjct: 68  NPTADQLWAPVLGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTF 119


>11_06_0152 +
           20669949-20670326,20670887-20670997,20671079-20671280,
           20671393-20671675,20672145-20672234,20672366-20672473,
           20672595-20672975,20673250-20673324,20673685-20673797,
           20676233-20676742,20676807-20677300
          Length = 914

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 510 SYGYAVDPSTNIEEQEGDAIVKSAMIDP*RRYRRQISF*NNKKATPRQKEGEPKMDNP 683
           S G+A D  ++ +E + DA+V+    DP  R RR+      +K   +Q++G P   +P
Sbjct: 62  SAGFAADAFSSGDEIDEDAVVELGEADPSSRKRRKEKK-KRRKEKRKQRKGAPPEGSP 118


>11_01_0706 + 5811722-5814025
          Length = 767

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 333 CWY*NSSVIFIRRHHSWSSTYLHGLGPDKLGS-TGLRWV 220
           CW+ N + I        S T+LHG  P  LGS T L+W+
Sbjct: 193 CWFWNLTSI---ESLELSETFLHGPFPTALGSFTALQWL 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,992
Number of Sequences: 37544
Number of extensions: 313484
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)