Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0197
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   97   2e-20
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         29   3.5  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.6  
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      29   4.6  
SB_21077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_35242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = +1

Query: 268 QVCAAPAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATRNILS 447
           Q+  AP V    + +    I +N KE+  NPKYEELFAP  GP+NPF+T+Q +A +N L+
Sbjct: 48  QINMAPVVTHKGDIEVSRKIDSNTKEVAFNPKYEELFAPQVGPDNPFKTKQQQAAKNALA 107

Query: 448 GYVELAHISDFQFENQRRTF 507
           GYVE AH+SDF FE QRRTF
Sbjct: 108 GYVEKAHMSDFAFEVQRRTF 127


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 194  NQFSNEALLTHLKPVDPSLSGPRPCKY 274
            N +  +A   HLKPVDP++   + C +
Sbjct: 1076 NPYQGQACCDHLKPVDPAVRTAQECSF 1102


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 295 PTNEDDTRVLIPANAKELTHNPKY----EELFAPAFGPENPFQTQQMKATRNILSG 450
           PTN D T+VL P+N  ++   P       E F P     N + T+  K    + SG
Sbjct: 467 PTNIDPTQVLPPSNTTQVVPPPNITHPSNEPFIPQASNFNSYSTRLPKLNLPVFSG 522


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 595 KEDTEGKSVFETIKKRPLDKKKENQK 672
           K+D E  S++E+I KR  D++KE ++
Sbjct: 83  KDDEEADSIYESIDKRMDDRRKERRE 108


>SB_21077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 476 SLICANST*PDSMFLVAFICCV*NGFSGPKAG 381
           S+ C  S+  D   +    CC  NGFSG KAG
Sbjct: 65  SVGCTTSSERDRPVVYTDGCCTRNGFSGAKAG 96


>SB_35242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 292 PQLEQHILAWSWPGQTRINRLKMGQESFIAELVCFCIIT 176
           P+LE   +AW+   Q  IN+++M Q    A  +CF +IT
Sbjct: 185 PKLEYATIAWNPYTQCNINKIEMIQRR--AASICFPMIT 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,802
Number of Sequences: 59808
Number of extensions: 389800
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)