Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0197
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    66   2e-11
AC024817-5|ABQ13054.1|  274|Caenorhabditis elegans Hypothetical ...    41   0.001
AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine re...    29   3.1  
AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine re...    29   3.1  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/79 (35%), Positives = 48/79 (60%)
 Frame = +1

Query: 271 VCAAPAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATRNILSG 450
           +  AP V   +      ++    KE+  NPK+++LF P  GP N F+++Q ++ +N L+G
Sbjct: 37  IVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQRSQKNTLTG 96

Query: 451 YVELAHISDFQFENQRRTF 507
           +VE AH+++F F  Q R+F
Sbjct: 97  FVEPAHLNEFHFNRQIRSF 115


>AC024817-5|ABQ13054.1|  274|Caenorhabditis elegans Hypothetical
           protein Y54G2A.12 protein.
          Length = 274

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 271 VCAAPAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATR 435
           +  AP V   +      ++    KE+  NPK+++LF P  GP N F+++Q   TR
Sbjct: 35  IVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQFGTTR 89


>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 497 EEHLELWLCCRSFYKY*GARRRCYSEICYDRPLKKIQKANQFLKQ 631
           E H  LWL C+  + +   R R Y E  Y R ++    A  FL Q
Sbjct: 51  EHHHGLWLDCKRDFSFDYGRSREYYETLYRRDMQGSPFAEFFLPQ 95


>AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein31 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 363 LWIVC*LFCVCWY*NSSVIFIRRHHSWS 280
           LW+    FC CWY  S   F     +W+
Sbjct: 127 LWVFSIAFCTCWYEISKCFFFYDTQTWT 154


>AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein32 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 363 LWIVC*LFCVCWY*NSSVIFIRRHHSWS 280
           LW+    FC CWY  S   F     +W+
Sbjct: 127 LWVFSIAFCTCWYEISKCFFFYDTQTWT 154


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 386 AGANSSSYFGLCVNSFAFAGIKTLVS 309
           AGA+SSS+F L +  FAF  +  +VS
Sbjct: 766 AGASSSSFFWLFITFFAFVVVGIVVS 791


>Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical
           protein F11A10.6 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -3

Query: 244 RINRLKMGQESFIAELVCFCIITFIL*TTAVFFYIEHFC**LKFYIEVC--TVMMMSQFI 71
           ++  +  G  +F+  +V F  +T+IL  +  FFYIE     L     +C   +++M QF+
Sbjct: 104 KLYAITQGVTTFV--IVVFAYLTYILFDSIKFFYIEP----LVGMTPICASVMVLMKQFL 157

Query: 70  NNFNVLKQK*TRLNYFISTFVVV 2
            +  VL     R+ Y    F+ +
Sbjct: 158 PDTIVLATPLGRIKYAHLPFLAI 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,850
Number of Sequences: 27780
Number of extensions: 313747
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)