Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0197
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10580.1 68414.m01192 transducin family protein / WD-40 repea...    45   5e-05
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea...    29   2.2  

>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
           family protein similar to splicing factor hPRP17
           (gi|3283220); contains 7 WD-40 repeats (PF00400);similar
           to ESTs emb|F15435 and dbj|AUO62661
          Length = 573

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 280 APAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQM-KATRNILSGYV 456
           A  V   N+  ++ + P     + +NP +++L+AP FGP +P+    + +  RN   G V
Sbjct: 41  ALTVANVNQSKSKPIDPTQ-HVVFYNPTHDQLWAPMFGPAHPYAKDGIAQGMRNHKLGSV 99

Query: 457 ELAHISDFQFENQRRTF 507
           E A I  F FE Q  TF
Sbjct: 100 EDASIGSFGFEEQYHTF 116


>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
           family protein contains 5 (4 significant) WD-40 repeats;
           similar to periodic tryptophan protein 1 homolog  
           (Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
           (PIR2:I39360) [Homo sapiens]
          Length = 461

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 349 THNPKYEELFAPAFGPENPF 408
           THNP    LF  AF P+NPF
Sbjct: 409 THNPNAGGLFFIAFSPDNPF 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,404
Number of Sequences: 28952
Number of extensions: 274682
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)