Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0196
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.3  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.3  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 397 QVLKPWYRKPDRLVCRGRH*RSLCCNQLFQ 308
           Q  + +YR  +RLV RG H  +L     +Q
Sbjct: 558 QTERRFYRHRERLVARGIHAEALVPRWCYQ 587


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 502 ASAPVCGIWIRTP 540
           A+  VCG+W R P
Sbjct: 224 ATRKVCGVWKRIP 236


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 367 QAYGT--RVLGPGGDSTNYGGRLDW 435
           + +GT  RV  P    T YGGRL W
Sbjct: 75  KVHGTTVRVRPPKVYPTPYGGRLVW 99


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 367 QAYGT--RVLGPGGDSTNYGGRLDW 435
           + +GT  RV  P    T YGGRL W
Sbjct: 389 KVHGTTVRVRPPKVYPTPYGGRLVW 413


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 367 QAYGT--RVLGPGGDSTNYGGRLDW 435
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 367 QAYGT--RVLGPGGDSTNYGGRLDW 435
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 325 NKEIFNDDRGKLTGQAYGT 381
           + E FN+ R K+  Q +GT
Sbjct: 96  SSEAFNEFRTKILAQVHGT 114


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 210 GNPQGDTPVTSLGTNNGGRQG 272
           G+P   +PV +L  + GG  G
Sbjct: 205 GSPTDHSPVLNLSKSGGGSAG 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,096
Number of Sequences: 336
Number of extensions: 4119
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)