Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0196
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   2.3  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    27   2.3  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    27   3.9  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    27   3.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.2  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   5.2  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 502 ASAPVCGIWIRTPTFLPVVWSRRSSVTKDQTS 597
           +S+ + G+ IR   F P V S +S + KDQ+S
Sbjct: 631 SSSKMAGLDIRKEPFTPAVPSAKSGLKKDQSS 662


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 519 WDLDKNTHFSA----GGMVSKEFGHKRPDVGLQAEIRHDW*SPQHLNNNLLPNKLV 674
           WD D +    +    GG +S    ++  D+   A I +DW      NN  LPNK++
Sbjct: 281 WDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYA-ISYDWSKGYTFNNAQLPNKIM 335


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 559 IPPAEKWVFLSRSHTPELMLSSQICHRFVYLGQ*WLVHSCSP 434
           + P+   + LS SH    + +  +C  F      WL+  C+P
Sbjct: 295 LDPSASILNLSSSHGESNLTNGLLCQNFKLFQDDWLMEDCAP 336


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 690 LNNKKKLIYLAKDYCLSVEVITNHGGSLLEDRRLVFCDRTPSRPYHRQKSG 538
           LN KK+ IY AKD     ++ +     LL D    F DR   R  HR+ +G
Sbjct: 109 LNEKKRKIYEAKD---MFDIGSESSTLLLHDASSQFIDRRKLR--HRRNAG 154


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 629 SPIMADLCLKTDVWSFVTELLRDHTTGRKVGVLIQIPHTGA-DAVIPDLPPIC 474
           SP+ AD  L   + +   +L+  H    + G+ ++IP       V+P+ P +C
Sbjct: 34  SPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVVPEGPQVC 86


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 320 PAFPKRPSSFCPKVPKTLPPPI 255
           P+ P  PS+  P  PK  PPP+
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPL 206


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 265 GKVFGTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 420
           GK  G     D  +   +      F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIGVGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,067
Number of Sequences: 5004
Number of extensions: 64299
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)