Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0196
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475 31 1.3
03_05_1134 + 30624373-30624378,30624474-30624592,30624729-306248... 30 1.8
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 29 3.1
09_04_0077 + 14370161-14370174,14370289-14370384,14370908-143709... 29 3.1
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 4.1
11_06_0610 - 25449085-25453284 29 5.4
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 7.2
11_04_0053 - 12881524-12881592,12882481-12882546,12882647-128828... 28 7.2
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 28 7.2
01_06_1293 - 36050847-36051304,36052343-36052826 28 9.5
>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
Length = 392
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 430 DWANKNAQATIDLNRQIGGRSGMTASAPVCGIWIRTPTFLPVVWSR 567
+WA+ A + + ++G + + VC W+R T P +W R
Sbjct: 10 EWADLPVDAVLAVFERLGAAEVLMGAGVVCRSWLRAATREPRLWRR 55
>03_05_1134 +
30624373-30624378,30624474-30624592,30624729-30624807,
30625784-30625858,30625954-30626028,30626314-30626651,
30626881-30627004,30627070-30627093
Length = 279
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 111 ILRITQTRDYIRISITDRTLGIVIT*FSVTRSAGNPQGDTPVTSLGTNNGGR 266
++ IT DYI I +TD+ L + VT +A N D P + + GR
Sbjct: 76 VVNITPAEDYIYIPVTDQQLVVSEVVGEVTSTAPNADLDQPTEANASPTTGR 127
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 572 LLRDHTTGRKVGVLIQIPHTG-ADAVIPDL 486
L DH GVLI PH G AVIPD+
Sbjct: 392 LFADHLASNNAGVLILEPHGGVVGAVIPDM 421
>09_04_0077 +
14370161-14370174,14370289-14370384,14370908-14370985,
14372075-14372159
Length = 90
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 454 LVHSCSPSLGVRRSWCCRLQVLKPW 380
L+ S +L +R+ WC L ++KPW
Sbjct: 50 LIDCTSYNLSIRKVWCNYLSMIKPW 74
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 406 STNYGGRLDWANKNAQATIDLNRQI 480
S+ +GG L W N + ++T+D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = -2
Query: 389 KTLVP*A*PVSLPRSSLKISLL*PAFPKRPSSFCPKVPKTLPPP 258
K+L P A PVSLP +K SL PA P S P V K+LPPP
Sbjct: 1262 KSLPPPA-PVSLPPPPVK-SLPPPA----PVSLPPPVVKSLPPP 1299
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 259 GGGKVFG-TLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 432
G G G T+G +DDG K + + + G+ G A G R G GG N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236
Query: 433 WANK 444
+K
Sbjct: 237 PPHK 240
>11_04_0053 -
12881524-12881592,12882481-12882546,12882647-12882808,
12883123-12883266,12883975-12884145,12884265-12884333,
12884899-12885054,12887398-12887673
Length = 370
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 329 LL*PAFPKRPSSFCPKVPKTLPPPIVCP 246
LL P P RP+ C P +P PI P
Sbjct: 30 LLHPRVPSRPTVICLAAPPKVPVPIASP 57
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 595 TSGLL*PNSFETIPPAEKWVFLSRSHTPELMLSSQICHRFVYLGQ*WLVHSCSPSL-GVR 419
T LL P SFE + E W+ P ++S+ V+ + W H C + GV+
Sbjct: 553 TPALLVPESFENLHVCENWL-------PRRVMSAWRAAGIVHALEKWDGHECGGRVTGVQ 605
Query: 418 RSWCCRL 398
++W L
Sbjct: 606 KAWSAAL 612
>01_06_1293 - 36050847-36051304,36052343-36052826
Length = 313
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 499 TASAPVCGIWIRTPTFLPVVWSRRSSVTKDQT 594
TA+ G+ RTP+F+PV + S + QT
Sbjct: 154 TAACNAGGVMFRTPSFMPVATNNASYYPQQQT 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,746
Number of Sequences: 37544
Number of extensions: 453581
Number of successful extensions: 1199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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