Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0196
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)                29   4.2  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)                  28   7.3  
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             28   9.6  
SB_35489| Best HMM Match : Sec23_BS (HMM E-Value=9.3)                  28   9.6  
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +1

Query: 259 GGGKVFGTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 423
           G G  FGT      GLFG AG N        G +TG  +G         ST +GG
Sbjct: 50  GFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGG 101


>SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)
          Length = 206

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 271 VFGTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNA 450
           VFG+ GQ    LF  +       N+ +  L G  +GT  LG G      G     ++ N 
Sbjct: 85  VFGSTGQPGGSLFVASSPGSGFGNNSQPGLFGTGFGTSQLGQGTGLLGNGTVATASSNNL 144

Query: 451 QAT 459
            AT
Sbjct: 145 PAT 147


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +1

Query: 241 HLGQTMGGGKVFGTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 420
           H   T G G ++   G NDD  FG +G   + FNDD     G   G         + NY 
Sbjct: 308 HRQDTPGHG-LYSNDGNNDDAHFGDSG-RHDNFNDDISN-DGNLNGGGANNNNNKNNNYN 364

Query: 421 GRLDWANKN 447
             ++  N N
Sbjct: 365 SGINNNNNN 373


>SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)
          Length = 141

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 528 DKNTHFSAGGMVSKEFGHKRPDVGLQAEIRHD 623
           + +  F  G ++ +EFGHKRP    +A    D
Sbjct: 64  EMDEEFGIGELIHEEFGHKRPSSSRKAYTSRD 95


>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 63  IAITKPKRKYNY*NKSILRI-TQTRDYIRISITDRTLGIVIT*FSVTRSAGNPQGDTPVT 239
           +AI+K + +     + ++RI T+TRD    ++    L I     S  R  G  + D  VT
Sbjct: 380 VAISKERERELQQREDLIRILTETRDQAHATLQRHGLSIPSHLPSKERPGGTAESDPNVT 439

Query: 240 SLGTNN 257
           SL   N
Sbjct: 440 SLQEQN 445


>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 712

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +1

Query: 244 LGQTMGGGKVFGTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 423
           +G  + G  + G +  N  G  GKAG    I  D    + G    + V+G   DS   GG
Sbjct: 469 IGGKVSGDAIVGKVSGNSIG--GKAGCTVIIDGDVNTAVIGGEMDSAVVGGEMDSAVVGG 526

Query: 424 RLDWA 438
            +D A
Sbjct: 527 EMDSA 531


>SB_35489| Best HMM Match : Sec23_BS (HMM E-Value=9.3)
          Length = 177

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 200 SISGQSSRRHPRDVTWDKQWGEARSLALWDKTMMASLEKLVTTKRS 337
           SI  Q  RR P+ +  +K+ G +RSL+   +TM   ++K V+  +S
Sbjct: 94  SIKRQRFRRSPQSMR-EKKEGRSRSLSFESRTMPHEVKKPVSRSKS 138


>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 288  SQSAKDLASPHCLSQVTSRGCRLEDCPLIE 199
            S S+ D +S HC+  + S   R+ED P  E
Sbjct: 960  SFSSSDGSSTHCIGDIVSSNSRIEDNPCNE 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,561,050
Number of Sequences: 59808
Number of extensions: 539432
Number of successful extensions: 1407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)