Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0196
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical ...    29   4.9  

>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +1

Query: 259 GGGKVFGTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 423
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 696 PILNNKKKLIYLAKDYCLSVEVITNHGGSLLEDRRLVFCDRTPSRPYHRQKSGCSYPD 523
           PI  N + L  +       +EVIT   G + ED++L+   +T  + Y R  +   + D
Sbjct: 425 PIRRNGENLRKIVSSAPTVLEVITKISGDVAEDKQLISRIKTSEKFYGRPSTSVDWND 482


>AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical
           protein Y58A7A.3 protein.
          Length = 883

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 696 PILNNKKKLIYLAKDYCLSVEVITNHGGSLLEDRRLVFCDRTPSRPYHRQKSGCSYPD 523
           PI  N + L  +       +EVIT   G + ED++L+   +T  + Y R  +   + D
Sbjct: 406 PIRRNGENLRKIVSSAPTVLEVITKISGDVAEDKQLISRIKTSEKFYGRPSTSVDWND 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,449
Number of Sequences: 27780
Number of extensions: 372110
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)