Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0196
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16630.1 68415.m01909 proline-rich family protein contains pr...    30   2.0  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    29   2.6  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   3.4  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   4.5  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    29   4.5  
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI...    29   4.5  
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    29   4.5  
At5g01790.1 68418.m00098 expressed protein                             28   6.0  

>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 317 AFPKRPSSFCPKVP--KTLPPPIV 252
           A P +PSSFCPK P    +PPP V
Sbjct: 139 AQPVQPSSFCPKPPTAPVMPPPQV 162


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 283 LGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 432
           L Q    L G     K   ++D    T +   +R+LG GG  T Y G L+
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 280 CQRPCLPPLFVPSDVTGVSP*GL-PADRVTEN*VITIPS 167
           C R   PP+ VPS  T  SP G  P+  ++ +  IT+PS
Sbjct: 400 CGRSTRPPVVVPSPPTTPSPGGSPPSPSISPSPPITVPS 438


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 340 NDDRGKLTG--QAYGTRVLGPGGDSTNYGGR 426
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +1

Query: 310 GKAGYNKEIFNDDRGKLTGQAYGTRVLGPGGDSTN----YGGRLDWANKNAQATIDLNRQ 477
           G   Y+   +NDD  K    A GT+  G  G+ +N    YG     ++   QAT ++   
Sbjct: 579 GSTDYDTSQYNDDMIKFRKMALGTQEYGTTGEYSNPTSDYGLYPSGSSSEGQATREMEMG 638

Query: 478 IGGRSGMTASAP 513
              ++G   S P
Sbjct: 639 KIKKTGQGYSGP 650


>At2g28390.1 68415.m03450 SAND family protein similar to Sand
           (GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
           SAND family protein
          Length = 607

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 204 SAGNPQGDTPVTSLGTNNGGRQGLWHF 284
           S  N + D+P   +    GG  GLWHF
Sbjct: 471 STTNQEQDSPGPDISVGTGGPFGLWHF 497


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 277 GTLGQNDDGLFGKAGYNKEIFNDDRGKLTGQAYG-TRVLGPGGDSTNYGGRL 429
           G L Q   G  G +  + +IF +D  K     Y  +R+LG GG  T Y G L
Sbjct: 378 GMLTQRLSGA-GPSNVDVKIFTEDGMKKATNGYAESRILGQGGQGTVYKGIL 428


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 320 PAFPKRPSSFCPKVPKTLPPP 258
           P  PK PSS  P +P   PPP
Sbjct: 63  PGTPKHPSSELPTLPPLTPPP 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,792
Number of Sequences: 28952
Number of extensions: 353324
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)