Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0195
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.35 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 433 GSRKVVIATNIAETSLTIDGIYYVV 507
           G RKV++AT +A   L I  + +V+
Sbjct: 458 GHRKVLVATGVAARGLDIKDVQHVI 482


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 185 YTKEPETDYLDASLITVMQIHL 250
           Y  +PE D L    I V++ HL
Sbjct: 137 YIADPEVDSLMVQAIQVLRFHL 158


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 310 CEILYERMKSLGPDVPELII 369
           CE+L E   S+  +VP LII
Sbjct: 424 CELLIEGTTSILINVPSLII 443


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 408 PDLRAGAPRLQEGGDRHQHRG 470
           PD+R G     E   +HQH G
Sbjct: 11  PDMRNGGVVSAEHPHQHQHYG 31


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 408 PDLRAGAPRLQEGGDRHQHRG 470
           PD+R G     E   +HQH G
Sbjct: 11  PDMRNGGVVSAEHPHQHQHYG 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,821
Number of Sequences: 336
Number of extensions: 2712
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)