Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0195
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 155 6e-39
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 124 7e-30
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 120 2e-28
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 109 2e-25
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 100 2e-22
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 81 2e-16
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 60 2e-10
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 58 9e-10
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 57 2e-09
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.0
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 2.6
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 27 2.6
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 26 4.6
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 8.1
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 155 bits (375), Expect = 6e-39
Identities = 72/83 (86%), Positives = 78/83 (93%)
Frame = +1
Query: 259 PGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGS 438
PGDIL+FLTGQEEIDT+CEILYER K LG +PEL+ILPVYSALPSE+Q+RIFEPAPPG
Sbjct: 719 PGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGG 778
Query: 439 RKVVIATNIAETSLTIDGIYYVV 507
RKVVIATNIAETSLTIDGIYYVV
Sbjct: 779 RKVVIATNIAETSLTIDGIYYVV 801
Score = 142 bits (343), Expect = 4e-35
Identities = 66/90 (73%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +2
Query: 2 AHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEV 181
AHERT+ TDVLFGLLK V KRP+LKLIVTSATLDA +FS YF++ PIFTIPGR++PVE+
Sbjct: 633 AHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEI 692
Query: 182 LYTKEPETDYLDASLITVMQIHL-KGPRGI 268
+YTK+PE DYLDA+L+TVMQIHL +GP I
Sbjct: 693 MYTKQPEADYLDAALMTVMQIHLSEGPGDI 722
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 510 PGFVKQKVYNSKTGMDSLVVTPIS 581
PGFVKQ ++ K GMDSL+VTPIS
Sbjct: 803 PGFVKQSCFDPKLGMDSLIVTPIS 826
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 124 bits (300), Expect = 7e-30
Identities = 55/90 (61%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Frame = +2
Query: 2 AHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEV 181
AHERT+ TD+L GL+K+ +RP+LK+IV SATLDA KF +YFF+AP+ +PGRT+PVE+
Sbjct: 199 AHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEI 258
Query: 182 LYTKEPETDYLDASLITVMQIHL-KGPRGI 268
YT+EPE DYL+A+L TV+QIH+ +GP I
Sbjct: 259 YYTQEPERDYLEAALRTVLQIHVEEGPGDI 288
Score = 85.8 bits (203), Expect = 4e-18
Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
Frame = +1
Query: 250 EGPPGDILLFLTGQEEIDTACEILYERMKSLGPD--VPELIILPVYSALPSEMQTRIFEP 423
E PGDIL+FLTG+EEI+ AC + L + L + P+Y +LP Q RIFEP
Sbjct: 282 EEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEP 341
Query: 424 APPGS-----RKVVIATNIAETSLTIDGIYYVV 507
P + RKVVI+TNIAETSLTIDGI YVV
Sbjct: 342 TPEDTKSGYGRKVVISTNIAETSLTIDGIVYVV 374
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 510 PGFVKQKVYNSKTGMDSLVVTPIS 581
PGF KQK+YN + ++SL+V+PIS
Sbjct: 376 PGFSKQKIYNPRIRVESLLVSPIS 399
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 120 bits (288), Expect = 2e-28
Identities = 48/88 (54%), Positives = 70/88 (79%)
Frame = +2
Query: 2 AHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEV 181
AHERT+HTD+LFGL+K + RP+LK++++SAT+DA KFS YF EAP+F +PGR +PV++
Sbjct: 541 AHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDI 600
Query: 182 LYTKEPETDYLDASLITVMQIHLKGPRG 265
YT +PE +Y+ A++ T++QIH P G
Sbjct: 601 YYTPQPEANYIQAAITTILQIHTTQPAG 628
Score = 113 bits (273), Expect = 1e-26
Identities = 49/84 (58%), Positives = 68/84 (80%)
Frame = +1
Query: 256 PPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPG 435
P GDIL+FLTGQ+EI+ E + E + LG +PE+I+ P+Y+ LPSE+Q +IF+P PPG
Sbjct: 626 PAGDILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPG 685
Query: 436 SRKVVIATNIAETSLTIDGIYYVV 507
+RKVV+ATNIAETS+TIDG+ +V+
Sbjct: 686 ARKVVLATNIAETSITIDGVNFVI 709
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 513 GFVKQKVYNSKTGMDSLVVTPIS 581
GFVKQ +YN +TGM+SLV P S
Sbjct: 712 GFVKQNMYNPRTGMESLVSVPCS 734
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 109 bits (263), Expect = 2e-25
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 256 PPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPG 435
P GDIL+F+TGQE+I+ CEI+ +R+ L D P L ILP+YS +P+++Q +IF+ A PG
Sbjct: 699 PAGDILVFMTGQEDIEATCEIIADRLNQLH-DAPRLSILPIYSQMPADLQAKIFDSAEPG 757
Query: 436 SRKVVIATNIAETSLTIDGIYYVV 507
RKVV+ATNIAETSLT+ GI YVV
Sbjct: 758 VRKVVVATNIAETSLTVHGISYVV 781
Score = 109 bits (261), Expect = 4e-25
Identities = 46/88 (52%), Positives = 71/88 (80%)
Frame = +2
Query: 2 AHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEV 181
AHER+++TD+L GLLK+ + +R ++KL+VTSAT+++ KFS +F AP FTIPGRT+PV++
Sbjct: 614 AHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDI 673
Query: 182 LYTKEPETDYLDASLITVMQIHLKGPRG 265
++ K P +DY++A++ V+QIHL P G
Sbjct: 674 MFAKAPCSDYVEAAVRQVLQIHLSQPAG 701
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 513 GFVKQKVYNSKTGMDSLVVTPIS 581
G+ K K+YNSK G+D+L VTPIS
Sbjct: 784 GYCKLKMYNSKLGIDTLQVTPIS 806
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 100 bits (239), Expect = 2e-22
Identities = 46/88 (52%), Positives = 64/88 (72%)
Frame = +2
Query: 2 AHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEV 181
AHERT+ TD+L G +K+ ++KRP L++I+ SATL+A +FS++F A I I GR +PV++
Sbjct: 218 AHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQI 277
Query: 182 LYTKEPETDYLDASLITVMQIHLKGPRG 265
YT PE DYLDA L T+ Q+H K P G
Sbjct: 278 HYTYTPEPDYLDACLRTIFQLHTKLPPG 305
Score = 89.8 bits (213), Expect = 3e-19
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +1
Query: 256 PPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPG 435
PPGDIL+FLTGQ+EI+ ++ K L ++P++ P++++LP E Q ++F PA
Sbjct: 303 PPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALAN 362
Query: 436 SRKVVIATNIAETSLTIDGIYYVV 507
RKVV++TNIAETS+TI GI YV+
Sbjct: 363 HRKVVLSTNIAETSVTISGIRYVI 386
Score = 30.7 bits (66), Expect = 0.16
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 489 RYILRGGPGFVKQKVYNSKTGMDSLVVTPIS 581
RY++ G +KQ +NSK G++SL V PIS
Sbjct: 383 RYVIDTGLAKIKQ--FNSKLGLESLTVQPIS 411
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/89 (41%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
Frame = +2
Query: 5 HERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFT--IPGRTFPVE 178
HERT+ TD+L G+LK+ ++KR + +L+++SA++DA K SQ+F + + T I G+ FPVE
Sbjct: 149 HERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVE 208
Query: 179 VLYTKEPETDYLDASLITVMQIHLKGPRG 265
L+ ++P +Y+D+++ TV+ I+ P G
Sbjct: 209 TLFLQKPTENYVDSAIETVININSTYPPG 237
Score = 76.2 bits (179), Expect = 3e-15
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +1
Query: 256 PPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPG 435
PPGDIL+FL+G++EI+ + + + + D L+ LP+++ L + Q R+F
Sbjct: 235 PPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGD 294
Query: 436 SRKVVIATNIAETSLTIDGIYYVV 507
RKV+ +TNIAETS+TIDGI YVV
Sbjct: 295 FRKVIFSTNIAETSITIDGIVYVV 318
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 513 GFVKQKVYNSKTGMDSLVVTPIS 581
GF KQ++YN T L+ PIS
Sbjct: 321 GFNKQRIYNPYTRTSKLINVPIS 343
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/64 (42%), Positives = 43/64 (67%)
Frame = +2
Query: 5 HERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVL 184
HER+I +D+L + +++ P LK+I+ SATL+A KF YF + + TIPG+T+PV
Sbjct: 761 HERSIDSDLLLIHVLHLLKQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRF 820
Query: 185 YTKE 196
Y ++
Sbjct: 821 YLED 824
Score = 46.0 bits (104), Expect = 4e-06
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Frame = +1
Query: 268 ILLFLTGQEEIDTACEILYERMKSLGPDVP------ELIILPVYSALPSEMQTRIFEPAP 429
+L+FL G EI R+KSL D+P + I ++S L S Q +F P
Sbjct: 906 VLVFLPGISEI--------LRVKSLIEDMPMFRNHRKFCIYMLHSTLSSAQQQSVFNIPP 957
Query: 430 PGSRKVVIATNIAETSLTIDGIYYVV 507
G RK+V++TNIAET +TI + V+
Sbjct: 958 KGCRKIVLSTNIAETGVTIPDVTCVI 983
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 58.0 bits (134), Expect = 9e-10
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Frame = +2
Query: 2 AHERTIHTDVLFGLLKQAVQKRPE----------LKLIVTSATLDAVKFSQ----YFFEA 139
AHER+++TD+L GLL + V+ R E LKLI+ SATL FS+ +
Sbjct: 524 AHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATLRVTDFSENKLLFSVPP 583
Query: 140 PIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLKGPRG 265
PI I R +PV + + + + DYL + V IH + P G
Sbjct: 584 PIIKIDARQYPVSIHFNRTTKPDYLQDAFDKVCLIHKRLPAG 625
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +1
Query: 361 LIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVV 507
+ +LP+YS L +E Q ++F+ +P G R ++ATN+AETS+TI I YVV
Sbjct: 702 MYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVV 750
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +1
Query: 256 PPGDILLFLTGQEEIDTACEILYER-MKSLGP 348
P G IL+FLTGQ+E++ C++L +R ++S P
Sbjct: 623 PAGSILVFLTGQQEVEQLCQMLRKRFVRSFRP 654
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +2
Query: 5 HERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVL 184
HER+I D+L LLK + + P LK+I+ SAT+++ F YF A I GRTFP++
Sbjct: 706 HERSIENDILLTLLKLVISRIPNLKVILMSATVNSDTFKYYFGNAGHLHIHGRTFPIKDY 765
Query: 185 YTKE 196
Y ++
Sbjct: 766 YIED 769
Score = 45.6 bits (103), Expect = 5e-06
Identities = 38/115 (33%), Positives = 56/115 (48%)
Frame = +1
Query: 163 NLPRRSLVHQGTGDGLFGRLTDHGHADPPEGPPGDILLFLTGQEEIDTACEILYERMKSL 342
++PRR L RL A+ G IL+FL G I C +KS
Sbjct: 782 DVPRRKKKEYEIDYHLISRLVSSIDAELGSSS-GSILVFLPGVSNI-ARC---IREIKS- 835
Query: 343 GPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVV 507
D + +LP++++L + Q R F+ RK++ ATNIAETS+TID + V+
Sbjct: 836 -KDGSKFEVLPLHASLNTSEQRRCFKTYT--KRKIICATNIAETSITIDDVVAVI 887
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 382 STPAELSAPARPAPRTSFSRTISHTPCQSLLGQ*GTAGYPPGAL 251
+ PA SAPA PAP + + + P S++ A PP ++
Sbjct: 1468 NAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIP--SVAQQPPSSV 1509
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 396 RDADPDLRAGAPRLQEGGDRHQHRGDVADHRRYILRGGPGFVKQKVYNSK 545
R D R+ R +E D QH D +H R R +++ +N +
Sbjct: 171 RHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDR 220
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +2
Query: 155 PGRTFPVEVLYTKEPETDYLDASLITVMQIHLKGPRGISCCSSL 286
P P+ + T E YL + + ++H P CC SL
Sbjct: 248 PNSMTPLISMITIEERIQYLQKEIELIQELHEMEPENRWCCESL 291
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 340 LGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTI 486
LGP P+L IL V P Q +F G +V+ T I L++
Sbjct: 48 LGPQPPQLEILEVGDLAPDRFQ-GLFNLHYSGDASLVLQTKIRANPLSV 95
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 460 NIAETSLTIDGIYYVVALASLNRKST 537
NIA+TSL Y+ LA++N ++T
Sbjct: 378 NIAQTSLLYSKALYLQTLAAMNTENT 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.137 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,061
Number of Sequences: 5004
Number of extensions: 45457
Number of successful extensions: 188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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