Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0195
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.72 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 304 TACEILYERMKSLGPDV-PELIILPVYSAL 390
           TAC  LYER++  GP +   LI+L + + +
Sbjct: 49  TACAALYERVEWSGPWILVTLIVLAIVNVM 78


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 405 LHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLTRRVNLFLASEEQQD 268
           LH GR  R+ R    L  VR   L  LV+Y+++   +++   +Q +
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPE 244


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 405 LHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLTRRVNLFLASEEQQDIPRGPFR 247
           LH GR  R+ R    L  VR   L  LV+Y+++   +++    Q+   R   R
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYILQNLQKKRTRAEGR 251


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 405 LHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLTRRVNLFLASEEQQDIPRGPFRWICMTVI 226
           LH GR  R+ R    L  VR   L  LV+Y+++   ++  +     +    F  ICM ++
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLN--MASVFMRIFNLICMMLL 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,588
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)