Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0194
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    30   0.31 
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.3  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.9  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   6.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   6.8  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.0  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 584 MQ*NLFINLIKYNNIKIPCFILQNKHFTEW*YKYS*RHEIMVNHLDACEELLNAIKSIYK 405
           M  N F+N   + +IK   F  + K++ E  Y Y+       N LD  E+ LN++ + YK
Sbjct: 208 MNQNSFLNNFNFEHIKAD-FAFRQKNYEESIYLYARLLIKFPNRLDYSEKYLNSLWNFYK 266


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 426 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 286
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -2

Query: 381 KTLVFYSHYMNIQKLPKTESEHPTFHMV------LSALLLMYI*KPEARVRAALA 235
           K++VF + Y +I K PK   E   FH +      + ++ L ++  PE R+  A+A
Sbjct: 26  KSIVFRTQYESIFKNPKHHGEKKPFHCLFKLAGTMKSISLSHLDIPEHRMSNAVA 80


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 134 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 21
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 243 PLSLAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCS 359
           P+ L PP     L +G        DAL +F+ + GY  S
Sbjct: 61  PILLPPPNITGKLHIGHALTITIQDALARFYAMHGYKVS 99


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 472 CLHEYLYYHSVKCLFWRIKQG 534
           CLH + +   V C+ W +++G
Sbjct: 425 CLHVFSFSSPVNCIDWNLREG 445


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 569 FINLIKYNNIKIPCFILQN 513
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,033
Number of Sequences: 5004
Number of extensions: 73586
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)